Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C6H44_RS05915 Genome accession   NZ_LT963391
Coordinates   1193055..1195271 (+) Length   738 a.a.
NCBI ID   WP_060411017.1    Uniprot ID   A0A3M5GA20
Organism   Pseudomonas syringae pv. cerasicola isolate CFBP6109     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1188055..1200271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H44_RS05900 (CFBP6109_01145) - 1190394..1191017 (+) 624 WP_057459553.1 glutathione S-transferase -
  C6H44_RS05905 (CFBP6109_01146) - 1191201..1192133 (+) 933 WP_057459552.1 ABC transporter ATP-binding protein -
  C6H44_RS05910 (CFBP6109_01147) - 1192130..1192918 (+) 789 WP_057459551.1 ABC transporter permease -
  C6H44_RS05915 (CFBP6109_01148) comA 1193055..1195271 (+) 2217 WP_060411017.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C6H44_RS05920 (CFBP6109_01149) exbB 1195353..1196030 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C6H44_RS05925 (CFBP6109_01150) - 1196027..1196458 (+) 432 WP_005733929.1 ExbD/TolR family protein -
  C6H44_RS05930 (CFBP6109_01151) lpxK 1196458..1197453 (+) 996 WP_060411019.1 tetraacyldisaccharide 4'-kinase -
  C6H44_RS05935 (CFBP6109_01152) - 1197471..1197656 (+) 186 WP_002552679.1 Trm112 family protein -
  C6H44_RS05940 (CFBP6109_01153) kdsB 1197653..1198417 (+) 765 WP_044318116.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C6H44_RS05945 (CFBP6109_01154) murB 1198452..1199471 (+) 1020 WP_054072179.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80569.91 Da        Isoelectric Point: 9.9505

>NTDB_id=1148752 C6H44_RS05915 WP_060411017.1 1193055..1195271(+) (comA) [Pseudomonas syringae pv. cerasicola isolate CFBP6109]
MRTGMIALASGLVALRFLPALPPTWLLLLMPILALMLLPFRTYPLALFLLGFTWVCVSAQWALNDRLVHRLDGQTLWLQG
KVVGLPSVAEGVVRFELEGARSRRAILPARIRVAWYGGPQVNSGERWRMAVKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLTPARGAWRDLIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPWACALAFIAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILVLIFSGRLGAWNWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLLAVPWVSMIVLPPAL
LGTLLLPVPVVGEGLLWLAGGTLEWLFMFLGWVAAVLPAWLPSAMPGWAWLLSLLGAFILLLPKGVPMRPLGWPLLLLCV
FPPLDSVPAGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHADSDHAGGA
AAVHQAFPVDRVLGGELARLAPQLDARLCESDARWEWDGVVFSTWRWEQGPDGNPASCMLSVDAGGERLLLTGDIDVDAE
RAAIASGFDLRANWLQSPHHGSRTSSSKVFLQAVGAVGVLISRGRNNAFGHPHPLVMARYRWLGMASYDSAELGAVSLRL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=1148752 C6H44_RS05915 WP_060411017.1 1193055..1195271(+) (comA) [Pseudomonas syringae pv. cerasicola isolate CFBP6109]
ATGCGCACAGGGATGATCGCGCTCGCGTCGGGGCTTGTGGCCTTACGCTTTCTGCCTGCTTTGCCGCCGACCTGGCTGTT
GCTGCTGATGCCGATACTGGCGTTGATGCTGCTACCGTTTCGCACCTATCCACTGGCGCTGTTCCTGCTCGGTTTTACCT
GGGTGTGTGTTTCTGCGCAGTGGGCGTTGAATGACCGTCTGGTTCATCGTCTGGACGGTCAGACGCTGTGGCTGCAAGGC
AAGGTAGTCGGTTTGCCCAGTGTCGCCGAGGGCGTGGTGCGTTTCGAACTGGAAGGGGCAAGGTCGCGCAGGGCGATATT
GCCTGCACGCATCCGGGTGGCGTGGTACGGCGGTCCGCAGGTCAACAGCGGTGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGGCCGGCCGGGCTGGTCAATCCTGATGCTTTTGATTACGAAGCCTGGCTGTTGGCGCAGCGCATCGGTGCCACCGGT
ACGGTGGTGGATGGTCAACTGCTGACACCTGCGCGCGGGGCGTGGCGCGACCTTATTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCAGAGAGGGCGGCTTGGCGGCGCTGGTGCTGGGCGATGGCTCCGGATTGTCGAGCACCGATTGGCAGGTGC
TGCAGGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGCCAGCATATCGGTTTGCTGGCCGGGGTGATTTACGCGCTG
GTCGCAGGCCTTGCACGCTGGGGGCTGTGGCCACGGGCTTTGCCCTGGCTGCCTTGGGCCTGTGCGCTGGCGTTCATCGC
TGCGCTGGGTTACGGGCTGCTGGCCGGTTTCGAGGTGCCGGTACGGCGTGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGTTTGCGCTTTCGGCACCTGGGCGTTGTCTGGCCGTTGTTACTGTCATTCAACGCGGTGCTGATTTTCGAGCCGCTG
GTGACACTGCAGCCGGGGTTCTGGCTGTCTTTCGCGGCGGTTGGCATTCTGGTGCTGATTTTCAGTGGACGTCTCGGTGC
CTGGAATTGGTGGCAAAGCTGGACGCGTGCGCAGTGGCTGATCGCAATTGGCTTGCTGCCTATTCTGCTGGCGCTGAACC
TGCCAATCAGCCTCAGCGGGCCGTTTGCCAATTTGCTGGCTGTGCCCTGGGTCAGCATGATCGTCCTGCCGCCTGCGTTG
CTTGGAACACTGCTGCTGCCGGTCCCTGTTGTGGGCGAAGGCTTGCTCTGGCTGGCCGGAGGGACGCTGGAGTGGCTGTT
TATGTTTCTCGGCTGGGTTGCCGCGGTCTTGCCCGCCTGGTTGCCCAGTGCAATGCCGGGCTGGGCGTGGCTGCTTAGTC
TGCTCGGGGCCTTCATTTTATTACTGCCCAAAGGCGTGCCGATGCGTCCGCTGGGTTGGCCATTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGACTCAGTGCCTGCAGGCCAGGTAGAAGTATTGCAGCTGGACGTGGGGCAGGGCCTGGCCATTCTCCT
GCGCACTCGAAATCACACGCTCTTGTACGACGCAGGTCCACGTTTCGGCGAGTTCGATATCGGTCAGCGTGTGGTCGTGC
CCGCCATGCGCAAGGCCGGTGTGCGTCATCTGGACCTGATGTTGATCAGTCACGCCGACTCCGATCATGCCGGGGGCGCA
GCGGCGGTTCATCAGGCATTTCCGGTTGACCGTGTACTGGGCGGTGAGCTGGCCAGGCTCGCGCCGCAACTCGACGCGCG
GTTGTGTGAGAGCGATGCGCGCTGGGAGTGGGATGGGGTGGTGTTCTCCACCTGGCGCTGGGAGCAGGGGCCTGATGGCA
ATCCCGCATCCTGCATGTTGAGTGTCGACGCCGGGGGCGAGCGTCTGCTGCTGACGGGTGATATCGACGTCGACGCGGAA
CGTGCGGCAATCGCCAGCGGTTTCGACCTTCGTGCCAATTGGTTGCAGTCCCCGCATCACGGCAGCCGGACCTCGTCATC
CAAAGTATTTCTTCAGGCCGTCGGAGCGGTTGGCGTGCTGATCTCCCGTGGCCGTAACAACGCCTTCGGCCACCCGCATC
CGTTGGTCATGGCGCGTTATCGATGGCTGGGTATGGCCAGTTATGACAGCGCTGAGCTGGGCGCTGTCAGTCTGCGGCTG
GGGACGTTCGGCACGCCGCAGGCAGAGCGCGCGCAACGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-665)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M5GA20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.064

97.154

0.603
  comA Ralstonia pseudosolanacearum GMI1000

32.904

100

0.381

Multiple sequence alignment