Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C6H44_RS05920 Genome accession   NZ_LT963391
Coordinates   1195353..1196030 (+) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas syringae pv. cerasicola isolate CFBP6109     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1190353..1201030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H44_RS05900 (CFBP6109_01145) - 1190394..1191017 (+) 624 WP_057459553.1 glutathione S-transferase -
  C6H44_RS05905 (CFBP6109_01146) - 1191201..1192133 (+) 933 WP_057459552.1 ABC transporter ATP-binding protein -
  C6H44_RS05910 (CFBP6109_01147) - 1192130..1192918 (+) 789 WP_057459551.1 ABC transporter permease -
  C6H44_RS05915 (CFBP6109_01148) comA 1193055..1195271 (+) 2217 WP_060411017.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C6H44_RS05920 (CFBP6109_01149) exbB 1195353..1196030 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C6H44_RS05925 (CFBP6109_01150) - 1196027..1196458 (+) 432 WP_005733929.1 ExbD/TolR family protein -
  C6H44_RS05930 (CFBP6109_01151) lpxK 1196458..1197453 (+) 996 WP_060411019.1 tetraacyldisaccharide 4'-kinase -
  C6H44_RS05935 (CFBP6109_01152) - 1197471..1197656 (+) 186 WP_002552679.1 Trm112 family protein -
  C6H44_RS05940 (CFBP6109_01153) kdsB 1197653..1198417 (+) 765 WP_044318116.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C6H44_RS05945 (CFBP6109_01154) murB 1198452..1199471 (+) 1020 WP_054072179.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=1148753 C6H44_RS05920 WP_002552676.1 1195353..1196030(+) (exbB) [Pseudomonas syringae pv. cerasicola isolate CFBP6109]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=1148753 C6H44_RS05920 WP_002552676.1 1195353..1196030(+) (exbB) [Pseudomonas syringae pv. cerasicola isolate CFBP6109]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGCCGCATCTGCTCGGACAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGACTCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAAT
TCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCT
GAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCG
GCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTGCTCGCCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCG
TCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCGCTTTCTGCAAAGTCGCGTCGATGAACTGGTGGTCGGCAT
GGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738

Multiple sequence alignment