Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   V529_RS18160 Genome accession   NZ_CP006890
Coordinates   3769661..3769780 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus velezensis SQR9     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3764661..3774780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V529_RS18140 (V529_37190) - 3765011..3765523 (+) 513 Protein_3633 bacteriocin biosynthesis protein AlbG -
  V529_RS18145 (V529_37200) - 3765530..3766906 (-) 1377 WP_038460210.1 YncE family protein -
  V529_RS18150 (V529_37210) - 3766946..3768301 (-) 1356 WP_038460212.1 YncE family protein -
  V529_RS18155 (V529_37230) rapF 3768532..3769677 (+) 1146 WP_038460214.1 tetratricopeptide repeat protein Regulator
  V529_RS18160 (V529_37240) phrF 3769661..3769780 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  V529_RS18165 (V529_37250) - 3769978..3770181 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  V529_RS18170 (V529_37260) - 3770195..3770398 (+) 204 WP_007407641.1 hypothetical protein -
  V529_RS18175 (V529_37270) - 3770433..3770618 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  V529_RS18180 (V529_37280) - 3770804..3771085 (+) 282 WP_007407643.1 hypothetical protein -
  V529_RS18185 (V529_37290) - 3771129..3771641 (+) 513 WP_007614439.1 stage II sporulation protein M -
  V529_RS18195 (V529_37310) - 3772232..3772450 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  V529_RS18200 (V529_37320) speB 3772618..3773490 (-) 873 WP_007614448.1 agmatinase -
  V529_RS18205 (V529_37330) speE 3773549..3774379 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=114875 V529_RS18160 WP_015240778.1 3769661..3769780(+) (phrF) [Bacillus velezensis SQR9]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=114875 V529_RS18160 WP_015240778.1 3769661..3769780(+) (phrF) [Bacillus velezensis SQR9]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment