Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   V529_RS18155 Genome accession   NZ_CP006890
Coordinates   3768532..3769677 (+) Length   381 a.a.
NCBI ID   WP_038460214.1    Uniprot ID   -
Organism   Bacillus velezensis SQR9     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3763532..3774677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V529_RS18135 (V529_37180) - 3764429..3764857 (-) 429 WP_032869448.1 DUF1934 domain-containing protein -
  V529_RS18140 (V529_37190) - 3765011..3765523 (+) 513 Protein_3633 bacteriocin biosynthesis protein AlbG -
  V529_RS18145 (V529_37200) - 3765530..3766906 (-) 1377 WP_038460210.1 YncE family protein -
  V529_RS18150 (V529_37210) - 3766946..3768301 (-) 1356 WP_038460212.1 YncE family protein -
  V529_RS18155 (V529_37230) rapF 3768532..3769677 (+) 1146 WP_038460214.1 tetratricopeptide repeat protein Regulator
  V529_RS18160 (V529_37240) phrF 3769661..3769780 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  V529_RS18165 (V529_37250) - 3769978..3770181 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  V529_RS18170 (V529_37260) - 3770195..3770398 (+) 204 WP_007407641.1 hypothetical protein -
  V529_RS18175 (V529_37270) - 3770433..3770618 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  V529_RS18180 (V529_37280) - 3770804..3771085 (+) 282 WP_007407643.1 hypothetical protein -
  V529_RS18185 (V529_37290) - 3771129..3771641 (+) 513 WP_007614439.1 stage II sporulation protein M -
  V529_RS18195 (V529_37310) - 3772232..3772450 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  V529_RS18200 (V529_37320) speB 3772618..3773490 (-) 873 WP_007614448.1 agmatinase -
  V529_RS18205 (V529_37330) speE 3773549..3774379 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45588.55 Da        Isoelectric Point: 4.5155

>NTDB_id=114874 V529_RS18155 WP_038460214.1 3768532..3769677(+) (rapF) [Bacillus velezensis SQR9]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKFDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYEIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
IECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=114874 V529_RS18155 WP_038460214.1 3768532..3769677(+) (rapF) [Bacillus velezensis SQR9]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCATAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGTTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACATATTTTTCT
ATGGATTATGCCCGGCAGGCTTATGAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTGGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATAGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567

Multiple sequence alignment