Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   V529_RS17230 Genome accession   NZ_CP006890
Coordinates   3582709..3583398 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis SQR9     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3577709..3588398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V529_RS17195 (V529_35250) - 3577907..3578389 (-) 483 WP_003151394.1 flagellar protein FlgN -
  V529_RS17200 (V529_35260) flgM 3578404..3578670 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  V529_RS17205 (V529_35270) - 3578740..3579159 (-) 420 WP_038460041.1 TIGR03826 family flagellar region protein -
  V529_RS17210 (V529_35280) comFC 3579233..3579922 (-) 690 WP_199910472.1 double zinc ribbon domain-containing protein Machinery gene
  V529_RS17215 (V529_35290) - 3579928..3580212 (-) 285 WP_003151389.1 competence protein ComFB -
  V529_RS17220 (V529_35300) comFA 3580270..3581655 (-) 1386 WP_038460045.1 DEAD/DEAH box helicase Machinery gene
  V529_RS17225 (V529_35310) - 3581763..3582611 (-) 849 WP_003151387.1 DegV family protein -
  V529_RS17230 (V529_35320) degU 3582709..3583398 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V529_RS17235 (V529_35330) degS 3583475..3584638 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  V529_RS17240 (V529_35340) - 3584861..3585508 (+) 648 WP_007614107.1 YigZ family protein -
  V529_RS17245 (V529_35350) - 3585513..3586733 (+) 1221 WP_038460047.1 LCP family protein -
  V529_RS17250 (V529_35360) - 3586832..3587908 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=114869 V529_RS17230 WP_003219701.1 3582709..3583398(-) (degU) [Bacillus velezensis SQR9]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=114869 V529_RS17230 WP_003219701.1 3582709..3583398(-) (degU) [Bacillus velezensis SQR9]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTAGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGTGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment