Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   V529_RS17220 Genome accession   NZ_CP006890
Coordinates   3580270..3581655 (-) Length   461 a.a.
NCBI ID   WP_038460045.1    Uniprot ID   -
Organism   Bacillus velezensis SQR9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3575270..3586655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V529_RS17185 (V529_35230) flgL 3575445..3576362 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  V529_RS17190 (V529_35240) flgK 3576374..3577891 (-) 1518 WP_038460039.1 flagellar hook-associated protein FlgK -
  V529_RS17195 (V529_35250) - 3577907..3578389 (-) 483 WP_003151394.1 flagellar protein FlgN -
  V529_RS17200 (V529_35260) flgM 3578404..3578670 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  V529_RS17205 (V529_35270) - 3578740..3579159 (-) 420 WP_038460041.1 TIGR03826 family flagellar region protein -
  V529_RS17210 (V529_35280) comFC 3579233..3579922 (-) 690 WP_199910472.1 double zinc ribbon domain-containing protein Machinery gene
  V529_RS17215 (V529_35290) - 3579928..3580212 (-) 285 WP_003151389.1 competence protein ComFB -
  V529_RS17220 (V529_35300) comFA 3580270..3581655 (-) 1386 WP_038460045.1 DEAD/DEAH box helicase Machinery gene
  V529_RS17225 (V529_35310) - 3581763..3582611 (-) 849 WP_003151387.1 DegV family protein -
  V529_RS17230 (V529_35320) degU 3582709..3583398 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V529_RS17235 (V529_35330) degS 3583475..3584638 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  V529_RS17240 (V529_35340) - 3584861..3585508 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52335.62 Da        Isoelectric Point: 10.0546

>NTDB_id=114868 V529_RS17220 WP_038460045.1 3580270..3581655(-) (comFA) [Bacillus velezensis SQR9]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINGFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFGAPSAKRQIT
YCRACVMMGRADEQTSLYSWNQAPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVVIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQLQLPVFLFVPSVHVLKKTTDYFQKLNIRTEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=114868 V529_RS17220 WP_038460045.1 3580270..3581655(-) (comFA) [Bacillus velezensis SQR9]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACGGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTGGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACAGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGGCAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCGTGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCAGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTTTTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGACAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATTGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625

Multiple sequence alignment