Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C6H33_RS19035 Genome accession   NZ_LT962481
Coordinates   4274283..4276499 (-) Length   738 a.a.
NCBI ID   WP_104723819.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. syringae isolate CFBP2118     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4269283..4281499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H33_RS19005 (CFBP2118_03611) murB 4270083..4271102 (-) 1020 WP_004408326.1 UDP-N-acetylmuramate dehydrogenase -
  C6H33_RS19010 (CFBP2118_03612) kdsB 4271137..4271901 (-) 765 WP_024639315.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C6H33_RS19015 (CFBP2118_03613) - 4271898..4272083 (-) 186 WP_002552679.1 Trm112 family protein -
  C6H33_RS19020 (CFBP2118_03614) lpxK 4272101..4273096 (-) 996 WP_104723817.1 tetraacyldisaccharide 4'-kinase -
  C6H33_RS19025 (CFBP2118_03615) - 4273096..4273527 (-) 432 WP_003317468.1 ExbD/TolR family protein -
  C6H33_RS19030 (CFBP2118_03616) exbB 4273524..4274240 (-) 717 WP_011267143.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C6H33_RS19035 (CFBP2118_03617) comA 4274283..4276499 (-) 2217 WP_104723819.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C6H33_RS19040 (CFBP2118_03618) - 4276636..4277424 (-) 789 WP_003421319.1 ABC transporter permease -
  C6H33_RS19045 (CFBP2118_03619) - 4277421..4278353 (-) 933 WP_104724437.1 ABC transporter ATP-binding protein -
  C6H33_RS19050 (CFBP2118_03620) - 4278537..4279160 (-) 624 WP_024660971.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80200.31 Da        Isoelectric Point: 10.3501

>NTDB_id=1148568 C6H33_RS19035 WP_104723819.1 4274283..4276499(-) (comA) [Pseudomonas syringae pv. syringae isolate CFBP2118]
MRTGMIALALGLLALRFLPALPPAWLLLLMPILALMLLPFRTYPLAFFLLGFTWACVSAQWALSDRLAQRLDGQTLWVQG
KVVGLPSVAEGVVRFELEDAWSRRARLPARIRVAWYGGQPVNSGERWRMAVKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDAIRQRLLTVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRFLPWLPSACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWSWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQGLFVFLGAAAAALPAWLPSAVPVWAWWLSLLGALLLLLPKGVPLRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVARVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPDGNPASCILSVDARGERLLLAGDIDVHAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=1148568 C6H33_RS19035 WP_104723819.1 4274283..4276499(-) (comA) [Pseudomonas syringae pv. syringae isolate CFBP2118]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCCCTGCCGCCGGCCTGGCTACT
GCTGCTGATGCCGATACTGGCGTTGATGTTGCTGCCGTTCCGTACCTATCCGCTGGCGTTCTTTCTGCTCGGTTTCACTT
GGGCCTGCGTTTCGGCGCAGTGGGCATTGAGTGACCGCTTGGCGCAGCGTCTCGATGGTCAGACGCTGTGGGTGCAGGGC
AAGGTGGTCGGTTTGCCGAGTGTCGCCGAAGGTGTGGTGCGCTTTGAACTGGAAGATGCCTGGTCACGACGTGCCAGGCT
GCCGGCGCGAATCCGCGTGGCGTGGTACGGCGGCCAGCCCGTAAACAGCGGCGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGGCCGGCCGGGCTGGTCAATCCGGATGCTTTCGACTATGAAGCCTGGCTACTGGCGCAGCGCATCGGTGCGACCGGC
ACGGTGGTGGATGGTCAGCTGTTGGCACCTGCGCGTGCCGCCTGGCGCGATGCCATTCGTCAGCGTCTGCTGACGGTCGA
TGCGCAGGGCCGGGAGGGCGGTCTGGCGGCGCTGGTGCTGGGCGATGGCTCAGGGCTGTCGAGCACCGACTGGCAGGTGT
TGCAGGATACTGGCACTGTGCATCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCCGGAGTGATCTACGCGCTG
GTCGCAGGCCTGGCGCGCTGGGGGCTGTGGCCACGCTTTTTGCCCTGGCTGCCGTCGGCGTGTGCACTGGCGTTCAGTGC
TGCACTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCGGTCCGGCGGGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGTCACCTGGGCGTGGTCTGGCCTTTGTTGCTGTCCTTCAACGCGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCGGCGGTCGGCATTCTGATCCTGATTTTCAGCGGGCGTCTTGGCGC
CTGGAGCTGGTGGCAAAGCTGGACACGGGCGCAATGGCTGATCGCCGTTGGCTTGTTGCCGATCCTGCTGGCGCTCAACC
TGCCGATCAGCCTCAGTGGCCCGTTTGCCAACCTGCTTGCGGTGCCTTGGGTCAGCGTGATTGTCCTGCCGCCGGCATTG
CTCGGAACGCTGTTGCTGCCAGTCCCCGTGGTCGGGGAAGGTCTGCTCTGGCTGGCGGGCGGGGCGCTGCAGGGACTGTT
CGTATTCCTCGGCGCGGCGGCCGCCGCATTGCCGGCCTGGTTGCCCAGTGCCGTGCCGGTCTGGGCATGGTGGTTGAGTC
TGCTCGGGGCCTTGCTCCTGTTGCTGCCCAAGGGCGTGCCCCTGCGTCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGAATCAGTGCCTGAAGGTCAGGTCGATGTGTTGCAACTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGCACCCGCAATCACACACTCCTGTATGACGCAGGTCCACGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCGGGTGTCCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGAGGTGCA
GCAGCGGTTCATCAGGCCTTTCCGGTGGCCCGCGTGCTAGGCGGTGAGCTGGCCCGCCTCGCGCCGCAACTCGACGCCCG
ACTGTGCGAGAGCGGTGCACGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ATCCGGCTTCCTGCATCCTCAGCGTCGACGCCAGGGGCGAGCGTCTGCTGCTGGCGGGCGATATCGACGTGCACGCCGAG
CGTGCGGCGATCGACAGCGGGTTCGACCTTCGTGCCCACTGGTTGCAGTCGCCGCATCACGGCAGCCGTACCTCGTCGTC
CAAAGCATTTCTGCGCGCCGTGGCACCGGTTGGCGTGCTGATTTCCCGTGGTCGCAACAACGCGTTCGGTCACCCGCATC
CGTTGGTCATGGCGCGCTATCGAGGCTTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCGGTCCGTCTGCAACTG
GGGACATTCGGAACGCCACAGGCCGAGCGCGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.57

97.019

0.607
  comA Ralstonia pseudosolanacearum GMI1000

34.675

100

0.397

Multiple sequence alignment