Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C6H33_RS19030 Genome accession   NZ_LT962481
Coordinates   4273524..4274240 (-) Length   238 a.a.
NCBI ID   WP_011267143.1    Uniprot ID   A0AAJ4E3K1
Organism   Pseudomonas syringae pv. syringae isolate CFBP2118     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4268524..4279240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H33_RS19005 (CFBP2118_03611) murB 4270083..4271102 (-) 1020 WP_004408326.1 UDP-N-acetylmuramate dehydrogenase -
  C6H33_RS19010 (CFBP2118_03612) kdsB 4271137..4271901 (-) 765 WP_024639315.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C6H33_RS19015 (CFBP2118_03613) - 4271898..4272083 (-) 186 WP_002552679.1 Trm112 family protein -
  C6H33_RS19020 (CFBP2118_03614) lpxK 4272101..4273096 (-) 996 WP_104723817.1 tetraacyldisaccharide 4'-kinase -
  C6H33_RS19025 (CFBP2118_03615) - 4273096..4273527 (-) 432 WP_003317468.1 ExbD/TolR family protein -
  C6H33_RS19030 (CFBP2118_03616) exbB 4273524..4274240 (-) 717 WP_011267143.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C6H33_RS19035 (CFBP2118_03617) comA 4274283..4276499 (-) 2217 WP_104723819.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C6H33_RS19040 (CFBP2118_03618) - 4276636..4277424 (-) 789 WP_003421319.1 ABC transporter permease -
  C6H33_RS19045 (CFBP2118_03619) - 4277421..4278353 (-) 933 WP_104724437.1 ABC transporter ATP-binding protein -
  C6H33_RS19050 (CFBP2118_03620) - 4278537..4279160 (-) 624 WP_024660971.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25834.33 Da        Isoelectric Point: 7.3261

>NTDB_id=1148567 C6H33_RS19030 WP_011267143.1 4273524..4274240(-) (exbB) [Pseudomonas syringae pv. syringae isolate CFBP2118]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEQKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1148567 C6H33_RS19030 WP_011267143.1 4273524..4274240(-) (exbB) [Pseudomonas syringae pv. syringae isolate CFBP2118]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCTTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAACAGAAGCTGGACAGCGAAAAGCTCAAGCAGCTGCGCGCTGAC
TCGCCGCTGGGCGAAATCCTTGCCGCAGGGCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCTGCCCGGGTCATTCATGAACTGGAGCGCTACCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGTTGCTTG
GTTTGCTCGGCACGGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGCTCCGGGGCCACCGCCAATGCCGGTGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACCGCGTCGGGTCTTATCGTAGCGATCCCGGCGATTTTCTTTCATCG
CTTTCTGCAGAGCCGCGTCGATGAGCTGGTAGTCGGCATGGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.095

88.235

0.689

Multiple sequence alignment