Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | MFPB19_RS06900 | Genome accession | NZ_LT960784 |
| Coordinates | 1363913..1364920 (-) | Length | 335 a.a. |
| NCBI ID | WP_099713232.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei isolate MFPB19 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1358913..1369920
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MFPB19_RS06860 (MFPB19_1432) | - | 1359248..1359706 (-) | 459 | WP_056947121.1 | hypothetical protein | - |
| MFPB19_RS06865 (MFPB19_1433) | - | 1359761..1360957 (-) | 1197 | WP_011374993.1 | acetate/propionate family kinase | - |
| MFPB19_RS06870 (MFPB19_1434) | - | 1360979..1361989 (-) | 1011 | WP_025016388.1 | class I SAM-dependent methyltransferase | - |
| MFPB19_RS06875 (MFPB19_1435) | - | 1362113..1362451 (-) | 339 | WP_056947123.1 | hypothetical protein | - |
| MFPB19_RS06880 (MFPB19_1436) | comGF | 1362414..1362926 (-) | 513 | WP_025016386.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| MFPB19_RS06885 (MFPB19_1437) | comGE | 1362901..1363206 (-) | 306 | WP_025016385.1 | hypothetical protein | Machinery gene |
| MFPB19_RS06890 (MFPB19_1438) | comGD | 1363193..1363645 (-) | 453 | WP_056947126.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| MFPB19_RS06895 (MFPB19_1439) | comGC | 1363617..1363916 (-) | 300 | WP_056947129.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| MFPB19_RS06900 (MFPB19_1440) | comGB | 1363913..1364920 (-) | 1008 | WP_099713232.1 | type II secretion system F family protein | Machinery gene |
| MFPB19_RS06905 (MFPB19_1441) | comGA | 1364913..1365803 (-) | 891 | WP_099713231.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| MFPB19_RS06910 (MFPB19_1442) | - | 1365918..1366649 (-) | 732 | WP_076632059.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| MFPB19_RS06915 (MFPB19_1443) | - | 1366740..1367240 (-) | 501 | WP_076632058.1 | VanZ family protein | - |
| MFPB19_RS06920 (MFPB19_1444) | - | 1367337..1367711 (+) | 375 | WP_011375004.1 | hypothetical protein | - |
| MFPB19_RS06930 (MFPB19_1445) | - | 1367898..1369298 (-) | 1401 | WP_076632055.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38493.43 Da Isoelectric Point: 9.3969
>NTDB_id=1148441 MFPB19_RS06900 WP_099713232.1 1363913..1364920(-) (comGB) [Latilactobacillus sakei isolate MFPB19]
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGQIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNRIILWGFLLV
LVLLIIGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGFIIICTY
LSILLPLYQTMEGIS
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGQIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNRIILWGFLLV
LVLLIIGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGFIIICTY
LSILLPLYQTMEGIS
Nucleotide
Download Length: 1008 bp
>NTDB_id=1148441 MFPB19_RS06900 WP_099713232.1 1363913..1364920(-) (comGB) [Latilactobacillus sakei isolate MFPB19]
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGTTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGTCAGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATACG
TGGGGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGCGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAGTCCTTTTGATAATAGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTAACCTTGGTAGCGCAA
TTAGAGGTTGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGTTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTATATCAAACAATGGAGGGAATTTCATGA
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGTTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGTCAGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATACG
TGGGGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGCGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAGTCCTTTTGATAATAGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTAACCTTGGTAGCGCAA
TTAGAGGTTGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGTTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTATATCAAACAATGGAGGGAATTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Latilactobacillus sakei subsp. sakei 23K |
98.507 |
100 |
0.985 |