Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LSAJ64_RS05740 Genome accession   NZ_LT960781
Coordinates   1115416..1116282 (-) Length   288 a.a.
NCBI ID   WP_016265144.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain J64     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1110416..1121282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAJ64_RS05725 (LSAJ64_1146) topA 1111651..1113735 (-) 2085 WP_016265142.1 type I DNA topoisomerase -
  LSAJ64_RS05730 (LSAJ64_1147) - 1113986..1114420 (-) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  LSAJ64_RS05735 (LSAJ64_1148) - 1114449..1115315 (-) 867 WP_016265143.1 NAD(P)H-binding protein -
  LSAJ64_RS05740 (LSAJ64_1149) dprA 1115416..1116282 (-) 867 WP_016265144.1 DNA-processing protein DprA Machinery gene
  LSAJ64_RS05745 (LSAJ64_1150) - 1116337..1117098 (-) 762 WP_016265145.1 ribonuclease HII -
  LSAJ64_RS05750 (LSAJ64_1151) ylqF 1117100..1117951 (-) 852 WP_025015771.1 ribosome biogenesis GTPase YlqF -
  LSAJ64_RS05755 (LSAJ64_1152) lepB 1118083..1118613 (-) 531 WP_076647574.1 signal peptidase I -
  LSAJ64_RS05760 (LSAJ64_1153) - 1118638..1118862 (-) 225 WP_016265150.1 YozE family protein -
  LSAJ64_RS05765 (LSAJ64_1154) - 1118873..1119502 (-) 630 WP_011374699.1 YpmS family protein -
  LSAJ64_RS05770 (LSAJ64_1155) - 1119515..1120426 (-) 912 WP_231953243.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31887.88 Da        Isoelectric Point: 8.5887

>NTDB_id=1148391 LSAJ64_RS05740 WP_016265144.1 1115416..1116282(-) (dprA) [Latilactobacillus sakei strain J64]
MLTKNQLLLKVHLAAGFGPISELRLAAWLVTSHNWALSALEIAQIARLPERYWPTFQASFQSTTLQRQCIDHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALDTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1148391 LSAJ64_RS05740 WP_016265144.1 1115416..1116282(-) (dprA) [Latilactobacillus sakei strain J64]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGCTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGTAACCAGTCATAATTGGGCGTTATCGGCGTTAGAAATTGCACAAATTGCGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCGAGTTTTCAAAGTACAACCTTACAACGCCAATGCATCGACCATGAAGTTCGAACGACTTATTTAACG
ATCTTAGATAAAGACTACCCACAACGCTTATTGGAAACCTATTTGCCACCTGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAACAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGGGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGTTTGTTACTATCTGAATACGCCCTCGATACACCAGCCCGGCGCTATCAATTTCCAGCCCGCAATA
AAATCATCGCGGGGTTATGTCATAGTTTAATTGTGACGGAAGCCCGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTCTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGAGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.958

100

0.99
  dprA Legionella pneumophila strain ERS1305867

37.153

100

0.372

Multiple sequence alignment