Detailed information
Bioinformatically predicted
Overview
| Name | comFA | Type | Machinery gene |
| Locus tag | LSAJ64_RS02705 | Genome accession | NZ_LT960781 |
| Coordinates | 547162..548499 (+) | Length | 445 a.a. |
| NCBI ID | WP_101377669.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain J64 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 542162..553499
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSAJ64_RS02690 (LSAJ64_0523) | rny | 543599..545164 (+) | 1566 | WP_101377668.1 | ribonuclease Y | - |
| LSAJ64_RS02695 (LSAJ64_0524) | - | 545320..546408 (+) | 1089 | WP_101378097.1 | glycosyltransferase family 4 protein | - |
| LSAJ64_RS02700 (LSAJ64_0525) | - | 546435..547100 (-) | 666 | WP_011374199.1 | YigZ family protein | - |
| LSAJ64_RS02705 (LSAJ64_0526) | comFA | 547162..548499 (+) | 1338 | WP_101377669.1 | DEAD/DEAH box helicase | Machinery gene |
| LSAJ64_RS02710 (LSAJ64_0527) | comFC | 548646..549170 (+) | 525 | WP_157826324.1 | ComF family protein | Machinery gene |
| LSAJ64_RS02715 (LSAJ64_0529) | hpf | 549297..549842 (+) | 546 | WP_056948836.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| LSAJ64_RS02720 (LSAJ64_0530) | secA | 550091..552454 (+) | 2364 | WP_011374203.1 | preprotein translocase subunit SecA | - |
Sequence
Protein
Download Length: 445 a.a. Molecular weight: 50436.85 Da Isoelectric Point: 9.9066
>NTDB_id=1148383 LSAJ64_RS02705 WP_101377669.1 547162..548499(+) (comFA) [Latilactobacillus sakei strain J64]
MGQQVIACGRQFTAAQLADTQNNNYSLPQIKRRPAFLRVKHRLVCQRCQQVVPPQTCLPDGRHYCAQCLLFGRLVEGDWL
YTVPECHLFENNIPKLTWEGQLTPHQEKAAQAVVEVVQTQKRHVLTAVTGAGKTEMLFQGILVALQKGQRVCLAAPRVAV
CLELYPRLQAAFATTSIMLMHGEQTEPYRYTQLVICTTHQLLKFYHAFDTVIVDEVDAFPFVDNPVLATAVEQACKPQCA
LLYLTATPTPAIKRAIAAKQMTVSELPLRFHGHLLPEPQRHVAFNWRAQLKKGRLPKRLERDCQTYLKTQQILLFVPQVR
LLQPVANRLSTLLPAVRIETLHANDPDQIKKITAFRAQQIQLMVTTTILERGVTFKNVAVLVLGAEHMVFNEAVLVQIAG
RAGRHKDYTQNPVHFYYQDYTRAIKGACRQIKAQNQRGRRLQSTV
MGQQVIACGRQFTAAQLADTQNNNYSLPQIKRRPAFLRVKHRLVCQRCQQVVPPQTCLPDGRHYCAQCLLFGRLVEGDWL
YTVPECHLFENNIPKLTWEGQLTPHQEKAAQAVVEVVQTQKRHVLTAVTGAGKTEMLFQGILVALQKGQRVCLAAPRVAV
CLELYPRLQAAFATTSIMLMHGEQTEPYRYTQLVICTTHQLLKFYHAFDTVIVDEVDAFPFVDNPVLATAVEQACKPQCA
LLYLTATPTPAIKRAIAAKQMTVSELPLRFHGHLLPEPQRHVAFNWRAQLKKGRLPKRLERDCQTYLKTQQILLFVPQVR
LLQPVANRLSTLLPAVRIETLHANDPDQIKKITAFRAQQIQLMVTTTILERGVTFKNVAVLVLGAEHMVFNEAVLVQIAG
RAGRHKDYTQNPVHFYYQDYTRAIKGACRQIKAQNQRGRRLQSTV
Nucleotide
Download Length: 1338 bp
>NTDB_id=1148383 LSAJ64_RS02705 WP_101377669.1 547162..548499(+) (comFA) [Latilactobacillus sakei strain J64]
ATGGGACAACAAGTAATTGCCTGTGGTCGCCAGTTTACGGCGGCCCAATTAGCCGATACGCAAAATAATAACTATAGTTT
ACCACAGATTAAGCGGCGACCTGCGTTTTTACGGGTCAAGCACCGCTTAGTCTGCCAACGTTGTCAGCAAGTGGTGCCGC
CGCAAACCTGCTTACCAGATGGGCGCCATTATTGCGCGCAATGTTTGTTATTTGGTCGTTTGGTAGAGGGCGATTGGTTA
TACACGGTACCGGAGTGTCATTTATTCGAAAATAACATACCAAAATTGACGTGGGAGGGGCAATTAACACCGCATCAGGA
AAAAGCTGCCCAAGCGGTGGTTGAGGTGGTTCAAACACAAAAACGGCACGTATTAACGGCCGTGACCGGTGCAGGGAAGA
CTGAGATGCTTTTTCAAGGAATTTTAGTTGCGCTTCAAAAGGGTCAGCGGGTATGTCTGGCAGCGCCTAGAGTCGCCGTT
TGCTTGGAACTTTATCCGCGCCTGCAAGCCGCCTTTGCAACGACTAGTATCATGTTGATGCACGGTGAGCAAACTGAGCC
CTATCGCTATACGCAGTTAGTGATTTGCACGACGCATCAGTTGCTAAAGTTTTATCACGCTTTTGACACGGTAATCGTTG
ATGAAGTCGATGCTTTTCCTTTTGTTGATAATCCCGTTTTAGCCACGGCAGTTGAACAAGCCTGCAAGCCCCAATGTGCT
TTATTATATTTAACGGCGACTCCGACCCCCGCTATTAAACGGGCAATTGCTGCTAAACAAATGACGGTTAGCGAATTACC
GCTCCGCTTTCATGGTCATCTATTACCAGAACCACAGCGGCACGTCGCTTTTAATTGGCGGGCCCAATTAAAAAAAGGTC
GGTTACCTAAACGACTTGAACGGGATTGCCAGACTTACTTAAAAACGCAACAGATTTTGTTATTCGTGCCGCAAGTGCGG
TTATTGCAACCAGTTGCCAATCGGTTATCAACCTTATTGCCGGCGGTCAGGATTGAAACATTGCATGCTAACGATCCGGA
TCAGATCAAAAAGATTACGGCGTTTAGAGCACAACAAATTCAGCTAATGGTGACGACCACCATTTTAGAACGGGGCGTTA
CGTTTAAAAACGTTGCAGTTTTGGTCTTAGGCGCGGAACACATGGTGTTTAATGAAGCCGTTTTGGTCCAGATTGCCGGG
CGAGCAGGACGGCATAAAGACTATACCCAAAATCCAGTTCATTTTTATTATCAGGATTATACCCGCGCTATTAAAGGAGC
TTGTCGGCAAATTAAGGCCCAAAATCAGAGGGGACGGCGATTACAATCAACTGTTTAA
ATGGGACAACAAGTAATTGCCTGTGGTCGCCAGTTTACGGCGGCCCAATTAGCCGATACGCAAAATAATAACTATAGTTT
ACCACAGATTAAGCGGCGACCTGCGTTTTTACGGGTCAAGCACCGCTTAGTCTGCCAACGTTGTCAGCAAGTGGTGCCGC
CGCAAACCTGCTTACCAGATGGGCGCCATTATTGCGCGCAATGTTTGTTATTTGGTCGTTTGGTAGAGGGCGATTGGTTA
TACACGGTACCGGAGTGTCATTTATTCGAAAATAACATACCAAAATTGACGTGGGAGGGGCAATTAACACCGCATCAGGA
AAAAGCTGCCCAAGCGGTGGTTGAGGTGGTTCAAACACAAAAACGGCACGTATTAACGGCCGTGACCGGTGCAGGGAAGA
CTGAGATGCTTTTTCAAGGAATTTTAGTTGCGCTTCAAAAGGGTCAGCGGGTATGTCTGGCAGCGCCTAGAGTCGCCGTT
TGCTTGGAACTTTATCCGCGCCTGCAAGCCGCCTTTGCAACGACTAGTATCATGTTGATGCACGGTGAGCAAACTGAGCC
CTATCGCTATACGCAGTTAGTGATTTGCACGACGCATCAGTTGCTAAAGTTTTATCACGCTTTTGACACGGTAATCGTTG
ATGAAGTCGATGCTTTTCCTTTTGTTGATAATCCCGTTTTAGCCACGGCAGTTGAACAAGCCTGCAAGCCCCAATGTGCT
TTATTATATTTAACGGCGACTCCGACCCCCGCTATTAAACGGGCAATTGCTGCTAAACAAATGACGGTTAGCGAATTACC
GCTCCGCTTTCATGGTCATCTATTACCAGAACCACAGCGGCACGTCGCTTTTAATTGGCGGGCCCAATTAAAAAAAGGTC
GGTTACCTAAACGACTTGAACGGGATTGCCAGACTTACTTAAAAACGCAACAGATTTTGTTATTCGTGCCGCAAGTGCGG
TTATTGCAACCAGTTGCCAATCGGTTATCAACCTTATTGCCGGCGGTCAGGATTGAAACATTGCATGCTAACGATCCGGA
TCAGATCAAAAAGATTACGGCGTTTAGAGCACAACAAATTCAGCTAATGGTGACGACCACCATTTTAGAACGGGGCGTTA
CGTTTAAAAACGTTGCAGTTTTGGTCTTAGGCGCGGAACACATGGTGTTTAATGAAGCCGTTTTGGTCCAGATTGCCGGG
CGAGCAGGACGGCATAAAGACTATACCCAAAATCCAGTTCATTTTTATTATCAGGATTATACCCGCGCTATTAAAGGAGC
TTGTCGGCAAATTAAGGCCCAAAATCAGAGGGGACGGCGATTACAATCAACTGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFA | Latilactobacillus sakei subsp. sakei 23K |
99.551 |
100 |
0.996 |
| comFA/cflA | Streptococcus pneumoniae TIGR4 |
39.211 |
96.854 |
0.38 |
| comFA/cflA | Streptococcus mitis SK321 |
38.621 |
97.753 |
0.378 |
| comFA/cflA | Streptococcus pneumoniae D39 |
38.979 |
96.854 |
0.378 |
| comFA/cflA | Streptococcus pneumoniae Rx1 |
38.979 |
96.854 |
0.378 |
| comFA/cflA | Streptococcus pneumoniae R6 |
38.979 |
96.854 |
0.378 |
| comFA/cflA | Streptococcus mitis NCTC 12261 |
38.515 |
96.854 |
0.373 |