Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | LSAJ64_RS02710 | Genome accession | NZ_LT960781 |
| Coordinates | 548646..549170 (+) | Length | 174 a.a. |
| NCBI ID | WP_157826324.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain J64 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 543646..554170
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSAJ64_RS02695 (LSAJ64_0524) | - | 545320..546408 (+) | 1089 | WP_101378097.1 | glycosyltransferase family 4 protein | - |
| LSAJ64_RS02700 (LSAJ64_0525) | - | 546435..547100 (-) | 666 | WP_011374199.1 | YigZ family protein | - |
| LSAJ64_RS02705 (LSAJ64_0526) | comFA | 547162..548499 (+) | 1338 | WP_101377669.1 | DEAD/DEAH box helicase | Machinery gene |
| LSAJ64_RS02710 (LSAJ64_0527) | comFC | 548646..549170 (+) | 525 | WP_157826324.1 | ComF family protein | Machinery gene |
| LSAJ64_RS02715 (LSAJ64_0529) | hpf | 549297..549842 (+) | 546 | WP_056948836.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| LSAJ64_RS02720 (LSAJ64_0530) | secA | 550091..552454 (+) | 2364 | WP_011374203.1 | preprotein translocase subunit SecA | - |
| LSAJ64_RS02725 (LSAJ64_0531) | prfB | 552524..553640 (+) | 1117 | WP_099049013.1 | peptide chain release factor 2 | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 20531.65 Da Isoelectric Point: 10.0414
>NTDB_id=1148384 LSAJ64_RS02710 WP_157826324.1 548646..549170(+) (comFC) [Latilactobacillus sakei strain J64]
MTGILCSDCQHWRQLYPQQHFKNQALFTYNRAMQLYFQRYKGQGDYQLRLLFERDIQTRFPVKPNVAYVPIPSDEQHQQA
RGFNPVQGLFENCFPLMSLLKKRPTEKGQAQKNRAERLASPQFFELIPQKLPDKLQSITILDDIYTTGRTLWHAQQCLRA
RYPQITINAITLAR
MTGILCSDCQHWRQLYPQQHFKNQALFTYNRAMQLYFQRYKGQGDYQLRLLFERDIQTRFPVKPNVAYVPIPSDEQHQQA
RGFNPVQGLFENCFPLMSLLKKRPTEKGQAQKNRAERLASPQFFELIPQKLPDKLQSITILDDIYTTGRTLWHAQQCLRA
RYPQITINAITLAR
Nucleotide
Download Length: 525 bp
>NTDB_id=1148384 LSAJ64_RS02710 WP_157826324.1 548646..549170(+) (comFC) [Latilactobacillus sakei strain J64]
TTGACGGGCATTTTATGTTCTGATTGTCAGCATTGGCGACAACTTTATCCCCAACAGCATTTTAAAAATCAAGCATTGTT
TACTTATAATCGGGCGATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGATTATCAATTACGGTTACTATTTGAAC
GGGACATTCAAACGCGGTTTCCAGTAAAGCCCAATGTAGCTTACGTGCCGATCCCATCCGATGAGCAACATCAACAAGCA
CGCGGTTTTAATCCAGTCCAAGGCTTATTCGAAAATTGTTTTCCGCTAATGTCACTCTTGAAAAAGCGACCAACGGAAAA
GGGGCAAGCGCAAAAAAATCGTGCAGAACGACTCGCAAGTCCGCAATTTTTTGAATTAATACCACAAAAGTTACCTGATA
AGCTACAGTCGATAACGATTCTAGATGATATTTACACGACCGGTCGAACGTTGTGGCATGCTCAGCAATGTCTGCGTGCT
CGTTATCCGCAAATTACAATTAATGCAATTACTTTGGCCAGATAG
TTGACGGGCATTTTATGTTCTGATTGTCAGCATTGGCGACAACTTTATCCCCAACAGCATTTTAAAAATCAAGCATTGTT
TACTTATAATCGGGCGATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGATTATCAATTACGGTTACTATTTGAAC
GGGACATTCAAACGCGGTTTCCAGTAAAGCCCAATGTAGCTTACGTGCCGATCCCATCCGATGAGCAACATCAACAAGCA
CGCGGTTTTAATCCAGTCCAAGGCTTATTCGAAAATTGTTTTCCGCTAATGTCACTCTTGAAAAAGCGACCAACGGAAAA
GGGGCAAGCGCAAAAAAATCGTGCAGAACGACTCGCAAGTCCGCAATTTTTTGAATTAATACCACAAAAGTTACCTGATA
AGCTACAGTCGATAACGATTCTAGATGATATTTACACGACCGGTCGAACGTTGTGGCATGCTCAGCAATGTCTGCGTGCT
CGTTATCCGCAAATTACAATTAATGCAATTACTTTGGCCAGATAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Latilactobacillus sakei subsp. sakei 23K |
91.549 |
81.609 |
0.747 |