Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   V529_RS01880 Genome accession   NZ_CP006890
Coordinates   383720..384673 (+) Length   317 a.a.
NCBI ID   WP_032872883.1    Uniprot ID   -
Organism   Bacillus velezensis SQR9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 378720..389673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V529_RS01860 (V529_03600) - 378766..380193 (+) 1428 WP_162472289.1 HAMP domain-containing sensor histidine kinase -
  V529_RS01865 (V529_03620) rapC 380352..381500 (+) 1149 WP_038456948.1 Rap family tetratricopeptide repeat protein Regulator
  V529_RS01870 (V529_03630) phrC 381484..381603 (+) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  V529_RS20115 - 381752..381847 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  V529_RS01875 (V529_03650) - 381942..383306 (-) 1365 WP_038456950.1 aspartate kinase -
  V529_RS01880 (V529_03660) ceuB 383720..384673 (+) 954 WP_032872883.1 ABC transporter permease Machinery gene
  V529_RS01885 (V529_03670) - 384663..385610 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  V529_RS01890 (V529_03680) - 385604..386362 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  V529_RS01895 (V529_03690) - 386384..387328 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  V529_RS01900 (V529_03700) - 387370..388794 (-) 1425 WP_038456952.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34931.21 Da        Isoelectric Point: 9.6741

>NTDB_id=114813 V529_RS01880 WP_032872883.1 383720..384673(+) (ceuB) [Bacillus velezensis SQR9]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSVATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=114813 V529_RS01880 WP_032872883.1 383720..384673(+) (ceuB) [Bacillus velezensis SQR9]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCCAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTGTTCATGAAAATCCTCGAGAGAATCAAGTTTAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAGTCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCGTCCTGGCTGCAGGGGGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment