Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   V529_RS01870 Genome accession   NZ_CP006890
Coordinates   381484..381603 (+) Length   39 a.a.
NCBI ID   WP_033575081.1    Uniprot ID   -
Organism   Bacillus velezensis SQR9     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 376484..386603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V529_RS01855 (V529_03590) - 378096..378779 (+) 684 WP_007609386.1 response regulator transcription factor -
  V529_RS01860 (V529_03600) - 378766..380193 (+) 1428 WP_162472289.1 HAMP domain-containing sensor histidine kinase -
  V529_RS01865 (V529_03620) rapC 380352..381500 (+) 1149 WP_038456948.1 Rap family tetratricopeptide repeat protein Regulator
  V529_RS01870 (V529_03630) phrC 381484..381603 (+) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  V529_RS20115 - 381752..381847 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  V529_RS01875 (V529_03650) - 381942..383306 (-) 1365 WP_038456950.1 aspartate kinase -
  V529_RS01880 (V529_03660) ceuB 383720..384673 (+) 954 WP_032872883.1 ABC transporter permease Machinery gene
  V529_RS01885 (V529_03670) - 384663..385610 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  V529_RS01890 (V529_03680) - 385604..386362 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4214.93 Da        Isoelectric Point: 8.0284

>NTDB_id=114812 V529_RS01870 WP_033575081.1 381484..381603(+) (phrC) [Bacillus velezensis SQR9]
MKLKSKWFVICLAAAAIFTVTGAGQTDQADFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=114812 V529_RS01870 WP_033575081.1 381484..381603(+) (phrC) [Bacillus velezensis SQR9]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGAGCAGGCCAGACAGA
TCAGGCTGACTTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

72.5

100

0.744

Multiple sequence alignment