Detailed information NTG0114811

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: V529_RS01865
• Genome accession: NZ_CP006890
• Coordinates: 380352..381500 (+)
• Length: 382 a.a.
• NCBI ID: WP_038456948.1
• Uniprot ID: -
• Organism: Bacillus velezensis SQR9
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 375352..386500

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V529_RS01845 (V529_03560)	-	375755..376438 (-)	684	WP_038456944.1	ABC transporter ATP-binding protein	-
V529_RS01850 (V529_03570)	-	376453..377883 (-)	1431	WP_038456945.1	ABC transporter permease	-
V529_RS01855 (V529_03590)	-	378096..378779 (+)	684	WP_007609386.1	response regulator transcription factor	-
V529_RS01860 (V529_03600)	-	378766..380193 (+)	1428	WP_162472289.1	HAMP domain-containing sensor histidine kinase	-
V529_RS01865 (V529_03620)	rapC	380352..381500 (+)	1149	WP_038456948.1	Rap family tetratricopeptide repeat protein	Regulator
V529_RS01870 (V529_03630)	phrC	381484..381603 (+)	120	WP_033575081.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
V529_RS20115	-	381752..381847 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
V529_RS01875 (V529_03650)	-	381942..383306 (-)	1365	WP_038456950.1	aspartate kinase	-
V529_RS01880 (V529_03660)	ceuB	383720..384673 (+)	954	WP_032872883.1	ABC transporter permease	Machinery gene
V529_RS01885 (V529_03670)	-	384663..385610 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
V529_RS01890 (V529_03680)	-	385604..386362 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45505.73 Da
• Isoelectric Point: 4.9916

>NTDB_id=114811 V529_RS01865 WP_038456948.1 380352..381500(+) (rapC) [Bacillus velezensis SQR9]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISTCFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=114811 V529_RS01865 WP_038456948.1 380352..381500(+) (rapC) [Bacillus velezensis SQR9]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCATGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAATCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCACGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568