Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CKV73_RS11460 Genome accession   NZ_LT906472
Coordinates   1936797..1939787 (+) Length   996 a.a.
NCBI ID   WP_095071292.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC13800     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1931797..1944787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV73_RS11430 (SAMEA4076768_02009) - 1932375..1932824 (-) 450 WP_003692085.1 CopD family copper resistance protein -
  CKV73_RS11435 (SAMEA4076768_02010) waaA 1932865..1934136 (-) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CKV73_RS11440 (SAMEA4076768_02011) gnd 1934199..1935647 (-) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  CKV73_RS11445 - 1935727..1935990 (-) 264 WP_017147189.1 hypothetical protein -
  CKV73_RS15175 (SAMEA4076768_02012) pilC 1936678..1936800 (+) 123 WP_308805568.1 hypothetical protein Machinery gene
  CKV73_RS11460 (SAMEA4076768_02013) pilC 1936797..1939787 (+) 2991 WP_095071292.1 PilC family type IV pilus tip adhesin Machinery gene
  CKV73_RS11475 (SAMEA4076768_02014) - 1940439..1940723 (+) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  CKV73_RS11485 (SAMEA4076768_02015) yccS 1941207..1943357 (-) 2151 WP_003697785.1 YccS family putative transporter -
  CKV73_RS11490 (SAMEA4076768_02016) - 1943474..1944700 (-) 1227 WP_003697786.1 PilT/PilU family type 4a pilus ATPase -

Sequence

Protein


Download         Length: 996 a.a.        Molecular weight: 108784.34 Da        Isoelectric Point: 9.7881

>NTDB_id=1147890 CKV73_RS11460 WP_095071292.1 1936797..1939787(+) (pilC) [Neisseria gonorrhoeae strain NCTC13800]
MNGRNQPEVKQNVPSSIKDKDRRREYTYYTHRTGGGSVSFNNNDTLVSQQSGTAVFGTATYLPPYGKVSGFDADALKERN
NAVDWIRTTRIALAGYSYIDVICRSYTGCPKLVYKTRFTFGQQGLKRKAGSKLDIYEDKSRENSPIYKLSDYPWLGVSFN
LGSENTVQNSKLFNKLISSFREGNNNQTIVSTTEGNPISLGDRQREHTAVAYYLNAKLHLLDKKGIEDIAQGKIVDLGIL
KPHVETTGRSLLDFWARWDIKDTGQIPVKLGLPQVKAGRCTNKPNPNNNTKAPSPALTAPALWFGPGQDGKAEMYSASVS
TYPDSSSSRIFLQELKTQTEPGKPGRYSLKSLNDGEIKSRQPSFNGRQTIIRLDDGVHLIKLNGSKDEVAAFVNLNGNNT
GKNDTFGIVKEANVNLDADEWKKVLLPWTVRGPDNDNKFKSINQKPEKYSQRYRIRDNNGNRDLGDIVNSPIVAVGGYLA
TAANDGMVHIFKKNGGSDERSYNLKLSYIPGTMPRKDIQSQESTLAKELRAFAEKGYVGDRYGVDGGFVLRQVELSGQKH
VFMFGAMGFGGRGAYALDLSKINGNYPAAAPLFDVKNGDKNGKNGKNRVEVELGYTVGTPQIGKIRNGKYAAFLASGYAA
KQIASQENKTALYVYDLKDTLGTPIAKIEVKGGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSSDKPSEWTVRT
IFQGTKPITSAPAVSRLADKRVVIFGTGSDLSEEDVVGKDQQYIYGIFDDDKGTGTVKVTVQNGTGGGLLEQTLTKENNT
LFLSNNKASGGSNGKGWVVRLREGERVTVKPTVVLRTAFVTIRSYTGNDKCGAQTAILGINTADGGALTPRSARPIVPDH
DSVAQYSGHKKTADGKSVPIGCMWKNSKTVCPNGYVYDKPVNVRYLDETETDGFSTTADGDAGGSGIDPAGRRPGKNNRC
FSKKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 2991 bp        

>NTDB_id=1147890 CKV73_RS11460 WP_095071292.1 1936797..1939787(+) (pilC) [Neisseria gonorrhoeae strain NCTC13800]
ATGAACGGGCGAAACCAGCCCGAGGTAAAGCAGAATGTGCCATCTTCAATAAAGGACAAAGACAGGAGGCGCGAATATAC
TTATTATACGCACAGAACAGGAGGAGGCTCTGTCTCATTCAACAATAACGATACCCTTGTTTCCCAACAAAGCGGTACTG
CCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGGCAAGGTTTCCGGTTTTGATGCCGACGCTCTGAAAGAGCGCAAC
AATGCCGTTGATTGGATTCGTACCACCCGCATCGCGCTGGCAGGCTACTCCTACATCGACGTCATATGCAGAAGCTACAC
AGGCTGTCCCAAACTTGTCTATAAAACCCGATTTACCTTCGGTCAACAAGGGTTGAAAAGAAAGGCAGGCAGCAAGCTGG
ATATATACGAAGACAAAAGCCGCGAAAATTCGCCCATTTACAAATTGTCGGATTATCCTTGGTTGGGCGTATCTTTCAAT
TTGGGCAGCGAGAATACCGTCCAAAATAGCAAATTATTCAACAAATTGATATCTTCTTTTAGAGAAGGCAATAATAATCA
AACCATCGTCTCTACGACAGAAGGCAACCCTATTTCCCTTGGCGACCGGCAGCGCGAACATACCGCCGTGGCCTATTATC
TGAACGCCAAACTGCACCTGCTGGACAAAAAAGGGATTGAAGATATCGCCCAAGGCAAAATAGTGGATTTGGGTATCTTG
AAACCGCACGTCGAGACGACAGGACGAAGCTTGCTAGATTTTTGGGCTAGGTGGGACATTAAAGATACCGGGCAGATTCC
GGTCAAGCTCGGCCTGCCGCAAGTCAAAGCAGGCCGCTGCACCAACAAACCGAACCCCAATAATAATACCAAAGCCCCTT
CGCCGGCACTGACCGCCCCCGCGCTGTGGTTCGGACCCGGGCAAGATGGTAAGGCGGAGATGTATTCCGCTTCGGTTTCC
ACCTACCCCGACAGTTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCAAACCGAACCCGGCAAACCCGGCCGCTA
TTCCCTCAAATCTTTGAATGATGGTGAGATTAAAAGTCGACAGCCGAGTTTCAACGGGCGGCAAACAATCATCCGATTGG
ATGACGGCGTACATTTGATCAAACTGAATGGAAGCAAGGATGAGGTCGCCGCTTTTGTCAATTTAAATGGAAACAACACC
GGCAAAAACGACACTTTCGGCATTGTTAAGGAAGCGAACGTCAATCTTGACGCCGACGAGTGGAAAAAAGTGCTGCTGCC
TTGGACGGTTCGGGGTCCCGATAATGACAATAAATTTAAATCAATTAACCAAAAACCAGAAAAATACAGCCAAAGATACC
GCATCCGCGACAACAACGGCAATCGCGATTTGGGCGACATCGTCAACAGCCCGATTGTCGCGGTCGGCGGGTATTTGGCA
ACCGCCGCGAACGACGGGATGGTGCATATCTTCAAAAAAAACGGCGGCAGTGATGAACGCAGCTACAATCTGAAGCTCAG
CTACATCCCCGGCACGATGCCGCGCAAGGATATTCAAAGCCAAGAATCCACCCTTGCCAAAGAGCTGCGCGCCTTTGCCG
AAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCAAGTCGAACTGAGCGGGCAAAAACAC
GTGTTTATGTTCGGCGCGATGGGTTTTGGCGGCAGGGGCGCGTATGCCTTGGATTTAAGCAAAATCAACGGAAATTATCC
GGCCGCCGCTCCCCTGTTTGATGTCAAAAATGGCGATAAAAACGGCAAAAACGGCAAAAATCGCGTGGAAGTGGAATTAG
GCTACACCGTCGGTACGCCGCAAATCGGCAAAATCCGCAACGGCAAATACGCCGCCTTCCTCGCCTCCGGTTATGCGGCT
AAACAAATTGCCAGCCAAGAAAATAAAACCGCGCTGTATGTGTATGATTTGAAAGACACCTTAGGTACGCCGATTGCAAA
AATCGAAGTGAAGGGCGGCAAAGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACGGTCGATATCG
CCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCAGCGACAAGCCGTCCGAGTGGACTGTACGCACT
ATTTTCCAAGGCACAAAACCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTGGTTATCTTCGGCAC
GGGCAGCGATTTGAGTGAAGAGGATGTAGTCGGTAAGGATCAACAATATATTTACGGTATCTTTGACGACGATAAGGGGA
CGGGGACGGTTAAGGTAACGGTACAAAACGGCACGGGAGGCGGGCTGCTCGAGCAAACGCTTACGAAGGAAAATAACACC
TTGTTCCTGAGCAATAATAAGGCATCCGGCGGATCGAACGGCAAAGGGTGGGTAGTGAGATTGAGGGAAGGAGAACGCGT
TACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTCACCATCCGTAGCTATACGGGTAATGACAAATGCGGCGCGC
AAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATCAC
GATTCGGTTGCGCAATATTCCGGCCATAAGAAAACCGCCGACGGCAAGTCCGTCCCCATAGGCTGCATGTGGAAAAACAG
CAAAACCGTCTGCCCGAACGGATATGTTTACGACAAGCCGGTTAATGTGCGTTATCTGGATGAAACGGAAACAGACGGAT
TTTCAACGACGGCGGACGGCGATGCGGGCGGCAGCGGTATAGACCCCGCCGGCAGGCGTCCCGGCAAAAACAACCGCTGC
TTCTCCAAAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAA
ACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(464-807)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

73.32

100

0.745

Multiple sequence alignment