Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CKV73_RS15175 Genome accession   NZ_LT906472
Coordinates   1936678..1936800 (+) Length   40 a.a.
NCBI ID   WP_308805568.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC13800     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1931678..1941800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV73_RS11430 (SAMEA4076768_02009) - 1932375..1932824 (-) 450 WP_003692085.1 CopD family copper resistance protein -
  CKV73_RS11435 (SAMEA4076768_02010) waaA 1932865..1934136 (-) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CKV73_RS11440 (SAMEA4076768_02011) gnd 1934199..1935647 (-) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  CKV73_RS11445 - 1935727..1935990 (-) 264 WP_017147189.1 hypothetical protein -
  CKV73_RS15175 (SAMEA4076768_02012) pilC 1936678..1936800 (+) 123 WP_308805568.1 hypothetical protein Machinery gene
  CKV73_RS11460 (SAMEA4076768_02013) pilC 1936797..1939787 (+) 2991 WP_095071292.1 PilC family type IV pilus tip adhesin Machinery gene
  CKV73_RS11475 (SAMEA4076768_02014) - 1940439..1940723 (+) 285 WP_003692093.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 40 a.a.        Molecular weight: 4572.42 Da        Isoelectric Point: 12.5257

>NTDB_id=1147896 CKV73_RS15175 WP_308805568.1 1936678..1936800(+) (pilC) [Neisseria gonorrhoeae strain NCTC13800]
MNKTLKRQVFRHTALYAAILMFSHTGGGGRWRKPINTLLS

Nucleotide


Download         Length: 123 bp        

>NTDB_id=1147896 CKV73_RS15175 WP_308805568.1 1936678..1936800(+) (pilC) [Neisseria gonorrhoeae strain NCTC13800]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGCGATGGCGCAAACCCATCAATACGCTATTATCATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

100

72.5

0.725

Multiple sequence alignment