Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   CKV73_RS03305 Genome accession   NZ_LT906472
Coordinates   563124..563738 (+) Length   204 a.a.
NCBI ID   WP_012503479.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC13800     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 558124..568738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV73_RS03270 (SAMEA4076768_00558) - 558622..558954 (+) 333 WP_003687908.1 hypothetical protein -
  CKV73_RS03275 (SAMEA4076768_00559) - 559284..559793 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  CKV73_RS03285 (SAMEA4076768_00560) - 560025..560606 (-) 582 WP_003690895.1 superoxide dismutase -
  CKV73_RS03295 (SAMEA4076768_00561) dnaB 560770..562173 (+) 1404 WP_012503477.1 replicative DNA helicase -
  CKV73_RS15230 - 562167..562279 (-) 113 Protein_558 IS5/IS1182 family transposase -
  CKV73_RS03300 (SAMEA4076768_00562) pilH 562430..563092 (+) 663 WP_047916986.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CKV73_RS03305 (SAMEA4076768_00563) pilI 563124..563738 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Machinery gene
  CKV73_RS03310 (SAMEA4076768_00564) pilJ 563735..564697 (+) 963 WP_047921846.1 PilW family protein Machinery gene
  CKV73_RS03315 (SAMEA4076768_00565) pilK 564676..565284 (+) 609 WP_047921847.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CKV73_RS03320 (SAMEA4076768_00566) pilL 565286..565759 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  CKV73_RS03325 (SAMEA4076768_00567) - 565829..566137 (-) 309 WP_003706588.1 AzlD family protein -
  CKV73_RS03330 - 566134..566845 (-) 712 Protein_565 AzlC family ABC transporter permease -
  CKV73_RS03335 (SAMEA4076768_00570) dut 567011..567463 (+) 453 WP_003701071.1 dUTP diphosphatase -
  CKV73_RS03340 (SAMEA4076768_00571) dapC 567535..568722 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22099.99 Da        Isoelectric Point: 4.9673

>NTDB_id=1147864 CKV73_RS03305 WP_012503479.1 563124..563738(+) (pilI) [Neisseria gonorrhoeae strain NCTC13800]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTGPYTPTPSGGDFKLNNNNLISKKDLAKAQLDRFDYELRNALPDAVAIHYAVCKDSSGGAPTLSGGTFSPNCDNKA
NGDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGHE

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1147864 CKV73_RS03305 WP_012503479.1 563124..563738(+) (pilI) [Neisseria gonorrhoeae strain NCTC13800]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACGGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACGGGGCCGTACACCCCCACTCCCTCTGGCGGCGATTTCAAGCTTAATAATAATAATTTGATAAGTAA
GAAGGATTTGGCAAAAGCCCAGTTGGACAGGTTCGATTATGAATTGAGAAACGCCTTGCCGGATGCGGTAGCTATTCATT
ACGCCGTCTGCAAGGATTCGTCGGGTGGCGCGCCGACATTGTCCGGCGGTACTTTTTCTCCAAATTGCGATAATAAGGCA
AACGGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGT
GAGCGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCATGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

90.686

100

0.907
  pilV Neisseria gonorrhoeae MS11

90.686

100

0.907
  pilV Neisseria meningitidis 8013

84.135

100

0.858

Multiple sequence alignment