Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CKV74_RS00955 Genome accession   NZ_LT906463
Coordinates   201043..201657 (+) Length   204 a.a.
NCBI ID   WP_373970128.1    Uniprot ID   -
Organism   Haemophilus pittmaniae strain NCTC13334     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 196043..206657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV74_RS00920 (NCTC13334_00185) rpmG 196902..197072 (-) 171 WP_005613503.1 50S ribosomal protein L33 -
  CKV74_RS00925 (NCTC13334_00186) rpmB 197084..197320 (-) 237 WP_005599762.1 50S ribosomal protein L28 -
  CKV74_RS00930 (NCTC13334_00187) radC 197500..198156 (-) 657 WP_007241743.1 DNA repair protein RadC -
  CKV74_RS00935 (NCTC13334_00188) coaBC 198348..199547 (+) 1200 WP_095176624.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CKV74_RS00940 (NCTC13334_00189) dut 199613..200068 (+) 456 WP_095176625.1 dUTP diphosphatase -
  CKV74_RS00945 (NCTC13334_00190) slmA 200072..200725 (+) 654 WP_007241741.1 nucleoid occlusion factor SlmA -
  CKV74_RS00950 (NCTC13334_00191) - 200747..200962 (+) 216 WP_095177125.1 YheU family protein -
  CKV74_RS00955 (NCTC13334_00192) crp 201043..201657 (+) 615 WP_373970128.1 cAMP-activated global transcriptional regulator CRP Regulator
  CKV74_RS00960 (NCTC13334_00193) glmU 202197..203570 (-) 1374 WP_039847748.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  CKV74_RS00965 (NCTC13334_00194) glnA 203843..205261 (-) 1419 WP_007241699.1 glutamate--ammonia ligase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22971.53 Da        Isoelectric Point: 8.6573

>NTDB_id=1147709 CKV74_RS00955 WP_373970128.1 201043..201657(+) (crp) [Haemophilus pittmaniae strain NCTC13334]
MRDPALDWFLTHCHLHKYPAKSTLIHAGEEANTLYYLIKGSVMVSSKDEDGKEMILTYLGSGQFFGEAGLFDDNAKRSAW
VKTKTPCEIAEISYKKYRQLIQVNPEILMFLTAQLSHRLQNTSRQVSNLAFLDVAGRIAQTLINLAKQPDAMTHPDGMQI
KITRQEIGQMVGCSRETVGRIIKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1147709 CKV74_RS00955 WP_373970128.1 201043..201657(+) (crp) [Haemophilus pittmaniae strain NCTC13334]
ATGCGCGATCCTGCACTAGATTGGTTCCTTACCCACTGCCATCTACATAAATATCCCGCAAAATCTACATTAATTCACGC
CGGTGAAGAAGCTAATACCCTTTATTATTTAATTAAGGGCTCCGTAATGGTTTCTTCAAAAGATGAGGATGGTAAAGAGA
TGATCCTCACTTATTTGGGCTCAGGTCAATTTTTTGGTGAAGCAGGATTATTTGATGACAATGCCAAACGTTCCGCTTGG
GTAAAAACCAAGACCCCTTGTGAGATCGCCGAAATCTCCTACAAAAAATATCGTCAATTAATTCAGGTAAATCCAGAAAT
ATTAATGTTTTTAACGGCTCAATTATCCCATCGGCTACAAAATACTTCACGTCAAGTGAGCAATCTAGCATTTTTGGATG
TTGCTGGTCGAATTGCACAAACCCTTATTAACTTGGCAAAACAACCAGATGCGATGACCCATCCTGACGGCATGCAAATC
AAAATTACCCGTCAAGAGATTGGCCAGATGGTCGGTTGCTCACGTGAAACCGTAGGGCGCATCATTAAAATGCTAGAAGA
TCAAAATTTGATCTCGGCTCACGGTAAAACTATCGTTGTATACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(136-200)

Cyclic nucleotide-binding domain (cNMP_binding)

(16-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

90.64

99.51

0.902
  crp Vibrio cholerae strain A1552

76.238

99.02

0.755
  crp Acinetobacter baumannii D1279779

47.739

97.549

0.466

Multiple sequence alignment