Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   CKV88_RS11980 Genome accession   NZ_LT906460
Coordinates   2557346..2558011 (-) Length   221 a.a.
NCBI ID   WP_002464973.1    Uniprot ID   G5JLC3
Organism   Staphylococcus simiae strain NCTC13838     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2552346..2563011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV88_RS11960 (SAMEA4384339_02432) - 2552951..2553541 (-) 591 WP_002464977.1 DUF4064 domain-containing protein -
  CKV88_RS11965 (SAMEA4384339_02433) - 2553598..2555496 (-) 1899 WP_157738312.1 FtsX-like permease family protein -
  CKV88_RS11970 (SAMEA4384339_02434) - 2555594..2556343 (-) 750 WP_002464975.1 ABC transporter ATP-binding protein -
  CKV88_RS11975 (SAMEA4384339_02435) braS 2556450..2557340 (-) 891 WP_002464974.1 HAMP domain-containing sensor histidine kinase Regulator
  CKV88_RS11980 (SAMEA4384339_02436) braR 2557346..2558011 (-) 666 WP_002464973.1 response regulator transcription factor Regulator
  CKV88_RS11985 (SAMEA4384339_02437) - 2558068..2558310 (-) 243 WP_002464972.1 hypothetical protein -
  CKV88_RS11990 (SAMEA4384339_02438) - 2559091..2559192 (-) 102 WP_002464142.1 SE2200 family small protein -
  CKV88_RS11995 (SAMEA4384339_02439) - 2559313..2559768 (-) 456 WP_002464140.1 MarR family winged helix-turn-helix transcriptional regulator -
  CKV88_RS12000 (SAMEA4384339_02440) - 2560017..2560778 (-) 762 WP_002464138.1 alpha/beta hydrolase family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25753.04 Da        Isoelectric Point: 5.7291

>NTDB_id=1147656 CKV88_RS11980 WP_002464973.1 2557346..2558011(-) (braR) [Staphylococcus simiae strain NCTC13838]
MKILIIEDDFVIAESLAIELEKWHYEVKIVEEFNHIIKVVKAYQPQLILLDINLPSFNGFHWCQEIRKFSSVPIIFISSR
VDEMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDFSIINHQLEVKGCVLYVDEAKISYNNDSINLSLTELQILK
LLFQNEGKYVSRTTLIEKCWESENFIDDNTLAVNMTRLRKKIKAIGIDDFIKTKKNIGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1147656 CKV88_RS11980 WP_002464973.1 2557346..2558011(-) (braR) [Staphylococcus simiae strain NCTC13838]
ATGAAGATTTTAATAATTGAAGATGATTTTGTCATTGCTGAAAGCTTAGCGATTGAATTAGAAAAATGGCATTACGAAGT
TAAAATAGTAGAAGAATTCAATCATATAATAAAAGTAGTTAAAGCGTATCAACCACAATTAATTTTATTAGATATTAATC
TACCATCATTTAATGGCTTTCATTGGTGCCAAGAAATACGAAAATTTTCTAGTGTACCTATTATATTTATTAGTTCACGG
GTAGATGAGATGGATCAAATCATGGCCATCCAAATGGGTGGTGACGATTTTATTGAAAAACCTTTCAATTTATCACTGAC
TATAGCGAAGATTCAAGCACTACTGCGACGTACTTATGATTTTTCAATCATCAACCATCAGCTAGAAGTTAAAGGTTGTG
TGTTATATGTTGACGAAGCAAAAATAAGTTACAACAATGACAGTATCAATTTATCATTAACTGAATTACAAATATTAAAG
TTACTTTTTCAAAATGAAGGTAAATACGTTAGTAGAACGACACTGATCGAAAAGTGTTGGGAATCTGAAAATTTCATCGA
TGATAATACATTGGCAGTTAATATGACACGATTGCGTAAAAAAATTAAAGCCATTGGCATTGATGACTTTATCAAAACAA
AGAAAAATATTGGATATAAGGTATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5JLC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

77.828

100

0.778

Multiple sequence alignment