Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   CKV88_RS11975 Genome accession   NZ_LT906460
Coordinates   2556450..2557340 (-) Length   296 a.a.
NCBI ID   WP_002464974.1    Uniprot ID   G5JLC4
Organism   Staphylococcus simiae strain NCTC13838     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2551450..2562340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV88_RS11960 (SAMEA4384339_02432) - 2552951..2553541 (-) 591 WP_002464977.1 DUF4064 domain-containing protein -
  CKV88_RS11965 (SAMEA4384339_02433) - 2553598..2555496 (-) 1899 WP_157738312.1 FtsX-like permease family protein -
  CKV88_RS11970 (SAMEA4384339_02434) - 2555594..2556343 (-) 750 WP_002464975.1 ABC transporter ATP-binding protein -
  CKV88_RS11975 (SAMEA4384339_02435) braS 2556450..2557340 (-) 891 WP_002464974.1 HAMP domain-containing sensor histidine kinase Regulator
  CKV88_RS11980 (SAMEA4384339_02436) braR 2557346..2558011 (-) 666 WP_002464973.1 response regulator transcription factor Regulator
  CKV88_RS11985 (SAMEA4384339_02437) - 2558068..2558310 (-) 243 WP_002464972.1 hypothetical protein -
  CKV88_RS11990 (SAMEA4384339_02438) - 2559091..2559192 (-) 102 WP_002464142.1 SE2200 family small protein -
  CKV88_RS11995 (SAMEA4384339_02439) - 2559313..2559768 (-) 456 WP_002464140.1 MarR family winged helix-turn-helix transcriptional regulator -
  CKV88_RS12000 (SAMEA4384339_02440) - 2560017..2560778 (-) 762 WP_002464138.1 alpha/beta hydrolase family protein -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 34424.93 Da        Isoelectric Point: 7.4078

>NTDB_id=1147655 CKV88_RS11975 WP_002464974.1 2556450..2557340(-) (braS) [Staphylococcus simiae strain NCTC13838]
MRNFLKSITQQLAITLSILALFGLIFYLYRLPSEAYILTTSMIVLLMVIYLGIKYLNFVKREDLKKRNEELEETLYQLKN
AQIEYKDNIESYFLTWVHQMKTPITAAQLLLERDDPKVINRVRQELIQIDNYTRLTLSYLKLLNEEADISLSQISINDLV
RPIIMKYTIQFIEQQTKIHYQPCNDKVLTDIRWIAIMIEQIINNALKYARGKDIWIDFDQQKQQLHIKDNGLGISEADLP
KIFDKGYSGYNGQSQTNASGIGLFIVKNIATHTNHKVTVDSVVDVGTTFTIQFPYT

Nucleotide


Download         Length: 891 bp        

>NTDB_id=1147655 CKV88_RS11975 WP_002464974.1 2556450..2557340(-) (braS) [Staphylococcus simiae strain NCTC13838]
ATGAGAAATTTCTTAAAATCTATAACACAACAGCTTGCTATTACATTGAGTATATTAGCTTTATTTGGTTTGATTTTTTA
TTTATATCGTTTACCTAGTGAAGCATATATACTCACAACAAGCATGATTGTATTATTAATGGTTATTTATCTAGGTATTA
AGTATTTAAATTTTGTTAAGCGAGAAGATTTAAAAAAGCGCAATGAAGAATTGGAAGAAACCCTTTATCAATTGAAAAAT
GCACAAATCGAGTATAAAGATAATATAGAAAGTTATTTTTTAACATGGGTACATCAAATGAAAACACCAATTACTGCGGC
ACAGTTATTACTGGAGAGAGATGATCCAAAAGTTATTAATCGTGTGCGACAGGAACTTATACAAATAGATAATTATACGC
GTTTAACTTTGAGTTATTTGAAATTGTTAAATGAAGAGGCGGATATTTCACTGTCACAAATATCAATTAACGATTTAGTG
AGACCTATTATTATGAAATACACTATACAATTTATTGAACAGCAAACAAAGATACATTATCAACCTTGTAACGACAAAGT
CTTAACTGATATCAGATGGATTGCTATTATGATTGAACAAATCATTAATAATGCATTAAAATATGCTAGAGGTAAAGATA
TTTGGATTGATTTTGATCAACAAAAACAGCAATTACATATTAAAGATAATGGCTTAGGTATTAGCGAAGCAGATTTGCCT
AAAATATTTGATAAAGGCTACTCTGGCTATAATGGTCAATCGCAAACAAATGCTAGTGGCATAGGTTTATTTATTGTCAA
AAATATCGCAACACATACCAATCATAAAGTAACTGTTGATTCGGTTGTGGATGTAGGTACGACATTTACAATTCAATTTC
CATATACGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(190-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5JLC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

72.852

98.311

0.716

Multiple sequence alignment