Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   CKV85_RS08250 Genome accession   NZ_LT906454
Coordinates   1703600..1704409 (-) Length   269 a.a.
NCBI ID   WP_017769512.1    Uniprot ID   -
Organism   Streptococcus acidominimus strain NCTC11291     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1698600..1709409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV85_RS08240 (SAMEA4504048_01751) smc 1699185..1702739 (-) 3555 WP_095123259.1 chromosome segregation protein SMC -
  CKV85_RS08245 (SAMEA4504048_01752) rnc 1702741..1703433 (-) 693 WP_095123261.1 ribonuclease III -
  CKV85_RS08250 (SAMEA4504048_01753) vicX 1703600..1704409 (-) 810 WP_017769512.1 MBL fold metallo-hydrolase Regulator
  CKV85_RS08255 (SAMEA4504048_01754) vicK 1704411..1705757 (-) 1347 WP_095123263.1 cell wall metabolism sensor histidine kinase VicK Regulator
  CKV85_RS08260 (SAMEA4504048_01755) vicR 1705750..1706457 (-) 708 WP_017769510.1 response regulator YycF Regulator
  CKV85_RS08265 (SAMEA4504048_01756) - 1706688..1707470 (+) 783 WP_095123265.1 amino acid ABC transporter ATP-binding protein -
  CKV85_RS08270 (SAMEA4504048_01757) - 1707485..1708309 (+) 825 WP_017769508.1 transporter substrate-binding domain-containing protein -
  CKV85_RS08275 (SAMEA4504048_01758) - 1708561..1709256 (+) 696 WP_017769507.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30135.29 Da        Isoelectric Point: 6.2789

>NTDB_id=1147492 CKV85_RS08250 WP_017769512.1 1703600..1704409(-) (vicX) [Streptococcus acidominimus strain NCTC11291]
MTKAGFKYSILASGSTGNAFYLETPQKRLLVDAGLTGKKITSLLAEIDRRPEDLDAILITHEHSDHIKGVGVLARKYHLD
LYANEKTWEVMDARNMLGKVDSSQKHIFSREKMLTFGDIDIESFGVSHDAVDPQFYRFMKDGKCFVMLTDTGYVSDRMAG
IVENADAYLIESNHDIDILRAGSYPWKTKQRILSDFGHLSNEAGAQAMIDTLGNRTKKIYLGHLSKENNIKELAHMTMET
QLMQAGLGVNHDFKVFDTSPDTATPLVDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1147492 CKV85_RS08250 WP_017769512.1 1703600..1704409(-) (vicX) [Streptococcus acidominimus strain NCTC11291]
GTGACAAAAGCAGGATTTAAATACAGTATTTTAGCTTCGGGTTCTACAGGGAATGCTTTCTACTTAGAAACCCCACAAAA
ACGTTTGTTGGTTGATGCCGGATTGACTGGTAAGAAGATAACCAGTCTTTTAGCTGAAATTGATAGGCGTCCAGAGGATT
TGGATGCGATTTTAATCACACACGAGCATTCCGATCATATCAAGGGTGTTGGTGTTTTAGCACGAAAATACCATCTGGAT
CTCTATGCCAATGAAAAAACCTGGGAAGTTATGGATGCCCGCAATATGTTAGGGAAGGTTGATAGTAGCCAAAAGCATAT
CTTTTCGCGAGAAAAAATGCTTACTTTTGGTGATATTGATATCGAATCATTTGGTGTTAGTCACGATGCTGTGGACCCTC
AGTTTTACCGTTTTATGAAAGATGGCAAGTGTTTTGTTATGCTCACGGATACCGGCTATGTTAGCGACCGTATGGCTGGC
ATTGTTGAAAATGCAGATGCTTATCTCATTGAGTCTAACCATGACATTGACATTTTAAGGGCAGGCTCCTATCCTTGGAA
AACCAAGCAACGCATTCTTTCTGATTTTGGGCATTTATCTAATGAAGCGGGTGCTCAGGCCATGATTGACACACTGGGAA
ATCGGACTAAAAAGATCTATCTAGGGCATTTGAGCAAGGAAAATAATATCAAAGAACTAGCCCATATGACCATGGAAACG
CAGTTAATGCAGGCAGGACTTGGTGTTAATCATGATTTTAAAGTTTTCGATACTTCTCCGGATACAGCAACACCTTTGGT
TGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

74.349

100

0.743

Multiple sequence alignment