Detailed information NTG1147487

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: CKV85_RS06945
• Genome accession: NZ_LT906454
• Coordinates: 1423509..1424738 (-)
• Length: 409 a.a.
• NCBI ID: WP_017768796.1
• Uniprot ID: -
• Organism: Streptococcus acidominimus strain NCTC11291
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1418509..1429738

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKV85_RS06925 (SAMEA4504048_01474)	-	1419072..1420025 (-)	954	WP_095121550.1	IS30 family transposase	-
CKV85_RS06930 (SAMEA4504048_01475)	-	1420622..1421824 (+)	1203	WP_331711874.1	IS110 family transposase	-
CKV85_RS06935 (SAMEA4504048_01476)	-	1422240..1422887 (-)	648	WP_095122954.1	deoxynucleoside kinase	-
CKV85_RS06940 (SAMEA4504048_01477)	yihA	1422895..1423494 (-)	600	WP_095122956.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
CKV85_RS06945 (SAMEA4504048_01478)	clpX	1423509..1424738 (-)	1230	WP_017768796.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
CKV85_RS06955 (SAMEA4504048_01479)	-	1424929..1425432 (-)	504	WP_095122960.1	dihydrofolate reductase	-
CKV85_RS06960 (SAMEA4504048_01480)	-	1425498..1426337 (-)	840	WP_095122962.1	thymidylate synthase	-
CKV85_RS06965 (SAMEA4504048_01481)	-	1426542..1427717 (+)	1176	WP_017768793.1	hydroxymethylglutaryl-CoA synthase	-
CKV85_RS06970 (SAMEA4504048_01482)	-	1427710..1428990 (+)	1281	WP_095122964.1	hydroxymethylglutaryl-CoA reductase, degradative	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45247.63 Da
• Isoelectric Point: 4.4373

>NTDB_id=1147487 CKV85_RS06945 WP_017768796.1 1423509..1424738(-) (clpX) [Streptococcus acidominimus strain NCTC11291]
MVDNRTNDVMVYCSFCGKNQEQVKKIIAGNGVFICDECVALSQEIIKEELAEEVLADLSDVPKPKELLDVLNQYVVGQDR
AKRALAVAVYNHYKRVSFTESRDEEDVVLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKKVSDDSSYMQEIISEDIQKFGLIPEFIGRLPVTAALEQLTVDDLITI
LTEPRNALVRQYETLLSYDDVELSFDREALEAIAEKAIDRKTGARGLRSIIEETMLDIMFEVPSQENVKRVRITKEAVDG
TGHPILETA

Nucleotide

• Length: 1230 bp

>NTDB_id=1147487 CKV85_RS06945 WP_017768796.1 1423509..1424738(-) (clpX) [Streptococcus acidominimus strain NCTC11291]
ATGGTAGATAATCGAACAAATGACGTTATGGTTTATTGCTCTTTTTGCGGTAAAAACCAAGAACAAGTCAAAAAAATCAT
CGCCGGAAATGGCGTCTTTATTTGTGATGAGTGTGTTGCATTATCACAGGAAATCATCAAAGAAGAGCTAGCCGAGGAAG
TATTAGCAGACCTCTCTGATGTTCCAAAACCTAAAGAACTCTTGGATGTTTTAAACCAATATGTGGTTGGCCAAGATCGT
GCAAAACGTGCCTTGGCAGTTGCTGTTTACAATCATTATAAGCGAGTTAGCTTTACGGAGAGCCGCGATGAAGAAGATGT
GGTCTTGCAAAAGTCTAATATCCTTATGATTGGCCCAACAGGATCTGGAAAAACCTTTTTGGCACAGACTTTGGCCAAGA
GTCTCAATGTCCCATTTGCCATTGCAGATGCTACTTCCTTGACAGAAGCAGGTTATGTTGGTGAAGATGTCGAGAATATC
TTGTTGAAGCTGATTCAGGCGGCTGATTACAATGTTGAACGTGCAGAACGCGGCATTATTTACGTGGATGAGATTGATAA
GATTGCTAAAAAAGGTGAGAATGTTTCTATTACACGTGATGTTTCTGGTGAAGGGGTACAACAAGCTCTCCTAAAAATCA
TCGAAGGAACAGTTGCTAGTGTACCTCCTCAGGGCGGCCGTAAGCATCCAAATCAAGAAATGATCCAAATCGACACGAAA
AACATCTTGTTCATTGTCGGAGGTGCTTTTGATGGCATTGAAGAGATCGTTAAGCAACGCCTAGGTGAGAAAATTATTGG
TTTCGGACAAAATAATAAAAAGGTTTCAGATGACTCTTCTTATATGCAAGAGATCATCTCAGAAGACATTCAAAAATTTG
GCTTGATTCCAGAGTTTATTGGACGCTTACCAGTCACTGCTGCCTTAGAGCAACTAACCGTTGACGATTTGATTACGATT
TTGACAGAACCTCGCAACGCGCTTGTTCGTCAATACGAAACGCTCTTGTCTTACGATGATGTTGAGTTGTCCTTTGATCG
CGAAGCTTTGGAAGCTATTGCAGAAAAGGCCATTGACCGTAAAACGGGAGCGCGTGGTCTTCGTTCGATTATTGAGGAAA
CCATGCTAGATATCATGTTTGAAGTGCCTAGTCAAGAAAATGTCAAACGTGTTAGAATCACTAAAGAAGCTGTTGATGGC
ACAGGCCATCCGATCCTCGAAACGGCTTAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-390)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	88.509	100	0.885
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.473	98.289	0.545