Detailed information    

insolico Bioinformatically predicted

Overview

Name   letS   Type   Regulator
Locus tag   CKV79_RS14190 Genome accession   NZ_LT906451
Coordinates   2115983..2116882 (+) Length   299 a.a.
NCBI ID   WP_408606906.1    Uniprot ID   A0A0W0VU84
Organism   Legionella lansingensis strain NCTC12830     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2110983..2121882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV79_RS09610 (SAMEA44548918_01942) gltX 2112451..2113866 (-) 1416 WP_028372723.1 glutamate--tRNA ligase -
  CKV79_RS09620 (SAMEA44548918_01943) letS 2114145..2116022 (+) 1878 WP_408606905.1 ATP-binding protein Regulator
  CKV79_RS14190 (SAMEA44548918_01944) letS 2115983..2116882 (+) 900 WP_408606906.1 response regulator Regulator
  CKV79_RS09625 (SAMEA44548918_01945) - 2116912..2118147 (+) 1236 WP_028372721.1 6-phosphofructokinase -
  CKV79_RS09630 (SAMEA44548918_01946) pilA2 2118255..2118662 (-) 408 WP_028372720.1 pilin Machinery gene
  CKV79_RS09635 (SAMEA44548918_01947) - 2118925..2119242 (+) 318 WP_028372719.1 BolA family transcriptional regulator -
  CKV79_RS09640 (SAMEA44548918_01948) - 2119235..2119666 (+) 432 WP_231950092.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CKV79_RS09645 (SAMEA44548918_01949) - 2119669..2120073 (-) 405 WP_028372717.1 hypothetical protein -
  CKV79_RS09650 (SAMEA44548918_01950) - 2120246..2121664 (+) 1419 WP_028372716.1 APC family permease -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33640.72 Da        Isoelectric Point: 6.7530

>NTDB_id=1147416 CKV79_RS14190 WP_408606906.1 2115983..2116882(+) (letS) [Legionella lansingensis strain NCTC12830]
MVSKWVIHNPQALGAKAFLFKPISIQKLHETIESLLNEATQSVNTNQELDNLRSQLRLAYPDVLVAEDNPINRMLLTSLL
QENCNMETVDNGEEAVKACQGKRYSVILLDLQMPKLNGLDAARLIRHQSILNKQTPAIVISADSSHLSKEKLKKAGVDFC
LQKPIDEKQLLNCLLRIVKGTKSAAIDWQLCVQKVSGNQALAEEFLSHFVEELRKNRDEFIQLLHDKNIKGLESAAHKLH
GACCFCGVPHLQTQVIRLEKQAKTAKQIDDLKNAFAELIQSIDEVIDEFDNLYQTNPSN

Nucleotide


Download         Length: 900 bp        

>NTDB_id=1147416 CKV79_RS14190 WP_408606906.1 2115983..2116882(+) (letS) [Legionella lansingensis strain NCTC12830]
TTGGTATCCAAGTGGGTCATTCATAACCCTCAAGCCCTAGGTGCAAAGGCTTTCTTATTTAAACCCATTAGTATTCAGAA
ACTGCACGAAACCATTGAATCTTTACTTAATGAAGCAACACAATCAGTAAATACAAACCAGGAATTAGATAATTTGCGCT
CGCAATTGCGATTAGCTTATCCCGATGTACTCGTTGCTGAGGATAATCCCATCAACCGCATGTTGTTAACATCGTTACTG
CAAGAGAACTGCAATATGGAGACAGTGGATAATGGCGAAGAAGCCGTTAAGGCATGTCAGGGCAAACGCTATAGTGTTAT
TCTGCTGGATCTGCAGATGCCTAAACTGAATGGTCTTGATGCTGCTCGTCTTATCCGTCATCAATCCATATTAAATAAAC
AAACACCTGCCATCGTCATTAGTGCAGACAGTAGCCATTTAAGCAAAGAAAAACTAAAAAAAGCAGGGGTAGATTTTTGT
TTACAAAAACCCATCGATGAAAAACAATTGCTTAATTGTTTGCTGCGCATAGTAAAGGGGACTAAATCGGCTGCCATAGA
CTGGCAATTATGCGTACAAAAGGTCTCAGGGAATCAGGCTTTGGCTGAAGAATTCCTTAGCCATTTTGTTGAAGAATTAC
GTAAAAACCGAGATGAATTTATCCAGTTATTGCATGATAAGAACATCAAAGGTTTGGAGAGTGCTGCTCATAAATTGCAT
GGAGCCTGTTGTTTCTGCGGTGTTCCTCATTTGCAAACACAGGTCATTCGCTTAGAAAAACAGGCAAAAACGGCGAAACA
AATTGATGATCTTAAAAATGCCTTTGCAGAATTAATTCAAAGTATTGACGAAGTCATCGATGAATTTGACAATCTATATC
AAACTAACCCTTCTAACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(63-172)

Hpt domain (Hpt)

(204-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0VU84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letS Legionella pneumophila strain ERS1305867

63.823

97.993

0.625

Multiple sequence alignment