Detailed information    

insolico Bioinformatically predicted

Overview

Name   letS   Type   Regulator
Locus tag   CKV79_RS09620 Genome accession   NZ_LT906451
Coordinates   2114145..2116022 (+) Length   625 a.a.
NCBI ID   WP_408606905.1    Uniprot ID   A0A0W0VTV0
Organism   Legionella lansingensis strain NCTC12830     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2109145..2121022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV79_RS09610 (SAMEA44548918_01942) gltX 2112451..2113866 (-) 1416 WP_028372723.1 glutamate--tRNA ligase -
  CKV79_RS09620 (SAMEA44548918_01943) letS 2114145..2116022 (+) 1878 WP_408606905.1 ATP-binding protein Regulator
  CKV79_RS14190 (SAMEA44548918_01944) letS 2115983..2116882 (+) 900 WP_408606906.1 response regulator Regulator
  CKV79_RS09625 (SAMEA44548918_01945) - 2116912..2118147 (+) 1236 WP_028372721.1 6-phosphofructokinase -
  CKV79_RS09630 (SAMEA44548918_01946) pilA2 2118255..2118662 (-) 408 WP_028372720.1 pilin Machinery gene
  CKV79_RS09635 (SAMEA44548918_01947) - 2118925..2119242 (+) 318 WP_028372719.1 BolA family transcriptional regulator -
  CKV79_RS09640 (SAMEA44548918_01948) - 2119235..2119666 (+) 432 WP_231950092.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CKV79_RS09645 (SAMEA44548918_01949) - 2119669..2120073 (-) 405 WP_028372717.1 hypothetical protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 71099.55 Da        Isoelectric Point: 8.3253

>NTDB_id=1147403 CKV79_RS09620 WP_408606905.1 2114145..2116022(+) (letS) [Legionella lansingensis strain NCTC12830]
MKRLGIKYQLRITTLIPVFLVALLFAVFYNGQFNKDLNQHMSRLGESYIRQLLPAAQFAMMRNDRKTLQGLIDASTINPE
IQAIAFYNAQGQLLAYRGGKHAIHKPFKPPQYTGDYIESKQIKPYTINFLAPITIPKFNLYSTSPFKKSPYLMALQADDI
LGWLSLDIDTQSMLIKRYQMYIVTIFITLLGLLISLTIHFFLSRRIYLPISRLRRSMKQILSNEFETHINVSSPGELGIV
EKGCSHLQKQYLNIVRDLNQHIEVATEDLQQSLELLEEKNIELSLEKKKCEEKSRQKSEFIANMSHEIRNPMNGVIGFTN
VLLESKLDSLQIDYVKTIKSSAQDLLTIINDILDYSKMDAGKLHLDCIPVDIRACIDEVLALAAPNAHRKGLDLIPATEI
NVPRKVLGDPIRIKQIITNLVNNAIKFTDHGYVLIRTCIEQESDKDYTLCLSVTDTGIGISPEDQPKLFNAFNQADTTIT
RRYGGSGLGLVICKKLAEQMQGRITFTSEINKGSTFSVRMKLEKLAAYEVEKEQSHRFDNLKVLCFDDNPLYLEAMCNGL
GFWGIECIRVTAFNQLEKAFNEHSDCSLAFINVNEGCEKQVAQVLRKKPFPVFWYPSGSFITLKP

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=1147403 CKV79_RS09620 WP_408606905.1 2114145..2116022(+) (letS) [Legionella lansingensis strain NCTC12830]
ATGAAGCGACTTGGTATCAAATATCAACTGCGCATCACCACACTCATCCCTGTTTTTTTAGTCGCCCTCCTCTTTGCTGT
CTTCTACAATGGCCAATTTAATAAAGATTTAAATCAACATATGTCACGACTGGGAGAGTCCTATATTCGTCAACTACTCC
CTGCAGCACAATTTGCCATGATGCGTAATGATCGTAAGACCTTGCAGGGCTTAATTGACGCATCTACCATCAATCCTGAA
ATCCAAGCTATAGCATTCTATAATGCCCAAGGACAACTTCTGGCTTATCGTGGCGGGAAGCACGCCATTCACAAACCATT
TAAACCGCCTCAATATACAGGTGATTACATTGAGAGCAAACAAATCAAACCTTATACGATCAATTTCCTTGCACCAATTA
CCATTCCCAAATTTAATCTTTATTCAACGAGCCCCTTTAAAAAATCCCCCTATCTTATGGCGTTACAGGCAGATGATATC
TTGGGGTGGCTTTCCCTTGATATTGATACTCAATCCATGCTGATTAAACGCTATCAAATGTATATTGTGACCATTTTTAT
TACACTTCTGGGGTTGCTCATTAGTTTGACTATTCATTTCTTCTTATCAAGACGCATTTATCTTCCTATTTCTCGTTTAC
GACGAAGCATGAAGCAAATTCTTAGTAATGAGTTTGAAACCCATATTAATGTATCAAGTCCTGGGGAATTGGGAATTGTT
GAAAAAGGCTGCTCCCATTTACAAAAACAATACCTAAATATCGTACGCGATTTGAATCAGCACATTGAAGTCGCTACTGA
AGATTTACAACAGAGTTTGGAACTTTTGGAAGAAAAAAACATTGAATTATCTTTAGAAAAAAAGAAATGTGAAGAAAAAA
GCCGGCAAAAATCTGAGTTTATAGCTAATATGAGCCACGAAATTCGTAATCCCATGAATGGGGTTATCGGTTTTACCAAT
GTGCTATTGGAATCAAAACTCGATAGTTTACAGATAGATTATGTGAAAACGATTAAATCCTCAGCCCAAGACTTGCTCAC
AATTATTAATGATATTCTTGACTATTCCAAAATGGATGCCGGTAAATTGCACTTAGATTGCATTCCTGTTGATATTCGTG
CGTGCATCGATGAAGTTTTAGCGTTGGCTGCACCCAACGCCCACAGAAAGGGGCTAGACCTTATCCCGGCAACAGAAATC
AATGTGCCACGCAAAGTACTCGGTGATCCCATTCGTATCAAACAAATTATTACCAACCTGGTAAATAACGCCATCAAATT
TACCGACCATGGCTATGTGTTGATTCGTACTTGCATTGAACAAGAATCAGACAAAGATTACACATTGTGTCTATCAGTTA
CCGATACTGGCATTGGCATATCTCCTGAAGATCAACCTAAATTATTTAACGCATTTAACCAAGCTGATACAACCATTACT
CGGCGTTATGGTGGTTCAGGATTAGGTTTGGTCATATGTAAGAAACTGGCGGAACAAATGCAAGGACGCATTACATTTAC
CAGCGAAATCAATAAGGGTTCAACGTTCTCTGTACGAATGAAATTGGAAAAATTGGCTGCTTATGAAGTGGAGAAGGAAC
AAAGCCATCGTTTTGATAATCTAAAAGTGCTCTGCTTTGACGATAATCCTTTATATTTAGAAGCGATGTGTAACGGTTTA
GGTTTTTGGGGAATTGAATGCATCCGTGTTACTGCCTTTAATCAACTAGAAAAAGCCTTTAATGAACATAGCGATTGCTC
CTTGGCATTTATCAATGTAAATGAAGGTTGTGAAAAACAAGTAGCGCAGGTATTAAGAAAAAAACCATTCCCTGTATTTT
GGTATCCAAGTGGGTCATTCATAACCCTCAAGCCCTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(408-524)

His Kinase A (phospho-acceptor) domain (HisKA)

(297-361)

Single cache domain 4 (sCache_4)

(35-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0VTV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letS Legionella pneumophila strain ERS1305867

77.352

100

0.776

Multiple sequence alignment