Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   CKV78_RS07030 Genome accession   NZ_LT906448
Coordinates   1543759..1544100 (+) Length   113 a.a.
NCBI ID   WP_032855368.1    Uniprot ID   -
Organism   Pasteurella dagmatis strain NCTC11617     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1538759..1549100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV78_RS07015 (SAMEA4362423_01441) ileS 1539197..1541995 (+) 2799 WP_005763327.1 isoleucine--tRNA ligase -
  CKV78_RS07020 (SAMEA4362423_01442) lspA 1542103..1542612 (+) 510 WP_005763329.1 signal peptidase II -
  CKV78_RS07025 (SAMEA4362423_01443) ispH 1542625..1543569 (+) 945 WP_005763330.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CKV78_RS07030 (SAMEA4362423_01444) comE1/comEA 1543759..1544100 (+) 342 WP_032855368.1 helix-hairpin-helix domain-containing protein Machinery gene
  CKV78_RS07035 (SAMEA4362423_01445) recQ 1544164..1546059 (-) 1896 WP_005763334.1 DNA helicase RecQ -
  CKV78_RS07040 (SAMEA4362423_01446) - 1546049..1546900 (-) 852 WP_005763336.1 phospholipase A -
  CKV78_RS07045 (SAMEA4362423_01447) cyaY 1546911..1547219 (-) 309 WP_005763338.1 iron donor protein CyaY -
  CKV78_RS10630 (SAMEA4362423_01448) lptM 1547342..1547461 (+) 120 WP_005763340.1 LPS translocon maturation chaperone LptM -
  CKV78_RS07050 (SAMEA4362423_01449) lysA 1547480..1548730 (+) 1251 WP_005763342.1 diaminopimelate decarboxylase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12070.92 Da        Isoelectric Point: 9.7290

>NTDB_id=1147368 CKV78_RS07030 WP_032855368.1 1543759..1544100(+) (comE1/comEA) [Pasteurella dagmatis strain NCTC11617]
MKFKPLLISLLAGFSLLSSSSVSAETVNVEAKTVVQQNLTTGQQTVTQTDQVNINTATAIELQKALIGIGTKKAEAIVQY
REAHGPFTAAEQLMEVQGIGKATLEKNKSRIAL

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1147368 CKV78_RS07030 WP_032855368.1 1543759..1544100(+) (comE1/comEA) [Pasteurella dagmatis strain NCTC11617]
ATGAAATTTAAACCGCTCTTAATTTCTCTTTTAGCTGGCTTTTCTTTACTATCAAGCTCTAGCGTATCGGCAGAAACAGT
CAACGTAGAAGCAAAAACAGTTGTTCAACAAAACCTAACAACAGGGCAACAGACCGTAACACAAACAGATCAAGTGAATA
TCAATACAGCAACTGCAATTGAATTACAAAAAGCGTTAATTGGTATTGGTACGAAAAAAGCTGAAGCCATTGTGCAATAT
CGTGAAGCACACGGACCTTTTACAGCAGCTGAACAACTCATGGAAGTACAGGGCATTGGCAAAGCAACATTAGAAAAAAA
CAAATCTCGCATTGCGCTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(49-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

53.636

97.345

0.522
  comEA/comE1 Glaesserella parasuis strain SC1401

48.246

100

0.487
  comEA Staphylococcus aureus N315

31.298

100

0.363

Multiple sequence alignment