Detailed information NTG0114723

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: A407_RS00595
• Genome accession: NZ_CP006874
• Coordinates: 106693..107175 (+)
• Length: 160 a.a.
• NCBI ID: WP_023546281.1
• Uniprot ID: -
• Organism: Listeria monocytogenes serotype 4b str. 81-0861
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 101693..112175

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A407_RS00550 (A407_0112)	-	102405..103319 (+)	915	WP_023546298.1	DnaD domain-containing protein	-
A407_RS00555 (A407_0113)	-	103367..103897 (+)	531	WP_041197739.1	hypothetical protein	-
A407_RS15215 (A407_0114)	-	103908..104075 (+)	168	WP_023546294.1	hypothetical protein	-
A407_RS00560 (A407_0115)	-	104081..104359 (+)	279	WP_041197735.1	hypothetical protein	-
A407_RS00565 (A407_0116)	-	104356..104586 (+)	231	WP_023546290.1	hypothetical protein	-
A407_RS00570 (A407_0117)	-	104589..105158 (+)	570	WP_023546288.1	DUF1642 domain-containing protein	-
A407_RS00575 (A407_0118)	-	105155..105343 (+)	189	WP_023546287.1	hypothetical protein	-
A407_RS15220 (A407_0119)	-	105340..105516 (+)	177	WP_015987084.1	hypothetical protein	-
A407_RS00580 (A407_0120)	-	105503..105793 (+)	291	Protein_121	YopX family protein	-
A407_RS15225 (A407_0121)	-	105890..106060 (+)	171	WP_023546284.1	hypothetical protein	-
A407_RS00585 (A407_0122)	-	106060..106344 (+)	285	WP_023546283.1	hypothetical protein	-
A407_RS00590 (A407_0123)	-	106341..106613 (+)	273	WP_023546282.1	hypothetical protein	-
A407_RS00595 (A407_0124)	ssbA	106693..107175 (+)	483	WP_023546281.1	single-stranded DNA-binding protein	Machinery gene
A407_RS00600	-	107194..107376 (+)	183	WP_023546280.1	hypothetical protein	-
A407_RS00605 (A407_0125)	-	107321..107725 (+)	405	WP_041197734.1	DUF1064 domain-containing protein	-
A407_RS00610 (A407_0126)	-	107729..108115 (+)	387	WP_023546277.1	DUF2481 family protein	-
A407_RS15160 (A407_0127)	-	108136..108291 (+)	156	WP_023546275.1	hypothetical protein	-
A407_RS00615 (A407_0128)	-	108379..108951 (+)	573	WP_023546273.1	sigma-70 family RNA polymerase sigma factor	-
A407_RS00620 (A407_0129)	-	109186..109905 (+)	720	WP_023546272.1	hypothetical protein	-
A407_RS00625 (A407_0130)	-	109971..110513 (+)	543	WP_023546270.1	terminase small subunit	-
A407_RS00630 (A407_0131)	-	110482..111813 (+)	1332	WP_023546268.1	PBSX family phage terminase large subunit	-

Sequence

Protein

• Length: 160 a.a.
• Molecular weight: 17930.73 Da
• Isoelectric Point: 4.8280

>NTDB_id=114723 A407_RS00595 WP_023546281.1 106693..107175(+) (ssbA) [Listeria monocytogenes serotype 4b str. 81-0861]
MMNRVVLVGRLTKDPELRYTPASVAVATFTLAVNRTFTNQNGEREADFIQCVVWRKPAENVANFLKKGSMAGVDGRIQTR
NYEDNDGKRVFVTEVVAETVQFLEPKNNNAEGATSNNYQNEANYSNNNKTSSYRADTSQKSDSFASEGKPFDINEDDLPF

Nucleotide

• Length: 483 bp

>NTDB_id=114723 A407_RS00595 WP_023546281.1 106693..107175(+) (ssbA) [Listeria monocytogenes serotype 4b str. 81-0861]
ATGATGAATCGTGTAGTGCTTGTAGGACGATTAACTAAAGACCCTGAATTACGTTACACTCCAGCTAGTGTGGCCGTTGC
GACTTTTACATTAGCTGTAAATAGAACATTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATTCAATGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGTATGGCAGGCGTTGATGGACGCATACAGACTCGA
AATTATGAAGATAACGACGGTAAACGTGTTTTTGTTACTGAAGTAGTTGCTGAAACAGTTCAATTCTTAGAGCCTAAAAA
TAACAATGCAGAAGGCGCTACATCGAATAATTATCAAAACGAGGCTAATTATTCAAATAACAATAAAACAAGCTCATATC
GAGCGGATACGAGCCAGAAGAGTGATTCATTTGCAAGTGAAGGTAAGCCGTTTGATATTAACGAAGATGATTTGCCATTT
TAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.372	100	0.681
ssb	Latilactobacillus sakei subsp. sakei 23K	52.353	100	0.556
ssbB	Bacillus subtilis subsp. subtilis str. 168	62.264	66.25	0.412