Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilE   Type   Machinery gene
Locus tag   CKW04_RS04710 Genome accession   NZ_LT906442
Coordinates   970405..970845 (-) Length   146 a.a.
NCBI ID   WP_231951044.1    Uniprot ID   A0A0W1A0G0
Organism   Legionella waltersii strain NCTC13017     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 965405..975845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW04_RS04695 (SAMEA4504053_00957) - 966393..967283 (-) 891 WP_231951018.1 class I SAM-dependent methyltransferase -
  CKW04_RS04700 (SAMEA4504053_00958) - 967291..967920 (-) 630 WP_058481380.1 hypothetical protein -
  CKW04_RS04705 (SAMEA4504053_00959) comEC 968078..970279 (-) 2202 WP_058481381.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CKW04_RS04710 (SAMEA4504053_00960) pilE 970405..970845 (-) 441 WP_231951044.1 type IV pilin protein Machinery gene
  CKW04_RS04715 (SAMEA4504053_00961) - 970861..974361 (-) 3501 WP_058481382.1 pilus assembly protein -
  CKW04_RS04720 (SAMEA4504053_00962) - 974374..974883 (-) 510 WP_058481383.1 pilus assembly protein -

Sequence


Protein


Download         Length: 146 a.a.        Molecular weight: 16095.42 Da        Isoelectric Point: 6.1936

>NTDB_id=1147223 CKW04_RS04710 WP_231951044.1 970405..970845(-) (pilE) [Legionella waltersii strain NCTC13017]
MNIGMKKQNINRELGFSLIELMIAMVILGILTAIAYPSYKQYIMESRRSDALSTLTQDQIIFERCYSQNFSYAAACGAIP
VFPQTSPQGYYRITATNVTPTTYTLTATPLGTQVEDTDCVSMSINQANVKTALDSSAASQPKCWNP

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1147223 CKW04_RS04710 WP_231951044.1 970405..970845(-) (pilE) [Legionella waltersii strain NCTC13017]
ATGAACATTGGAATGAAAAAACAAAACATCAACAGGGAGTTAGGGTTTTCATTAATTGAATTGATGATAGCCATGGTTAT
CTTAGGGATTTTGACTGCTATTGCCTACCCCTCGTATAAACAATACATCATGGAGTCAAGACGTTCTGATGCCCTAAGTA
CATTAACTCAAGATCAAATCATTTTTGAACGCTGCTACTCGCAAAATTTTTCATATGCGGCAGCTTGTGGTGCAATTCCA
GTCTTTCCTCAAACCTCTCCACAGGGATATTACAGAATTACAGCCACTAACGTAACTCCAACAACCTACACCTTAACCGC
GACACCTCTTGGTACACAAGTCGAGGATACGGATTGTGTGAGTATGTCTATTAATCAAGCCAATGTTAAAACTGCATTGG
ACTCTTCCGCAGCATCCCAACCTAAATGTTGGAACCCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0W1A0G0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

67.586

99.315

0.671

  pilE Legionella pneumophila strain ERS1305867

67.586

99.315

0.671


Multiple sequence alignment