Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CKW04_RS04705 Genome accession   NZ_LT906442
Coordinates   968078..970279 (-) Length   733 a.a.
NCBI ID   WP_058481381.1    Uniprot ID   -
Organism   Legionella waltersii strain NCTC13017     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 963078..975279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW04_RS04685 (SAMEA4504053_00955) - 963304..964263 (-) 960 WP_058481377.1 glycosyltransferase family 2 protein -
  CKW04_RS04690 (SAMEA4504053_00956) ankK 964398..966362 (+) 1965 WP_133141251.1 Dot/Icm T4SS effector AnkK/LegA5 -
  CKW04_RS04695 (SAMEA4504053_00957) - 966393..967283 (-) 891 WP_231951018.1 class I SAM-dependent methyltransferase -
  CKW04_RS04700 (SAMEA4504053_00958) - 967291..967920 (-) 630 WP_058481380.1 hypothetical protein -
  CKW04_RS04705 (SAMEA4504053_00959) comEC 968078..970279 (-) 2202 WP_058481381.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CKW04_RS04710 (SAMEA4504053_00960) pilE 970405..970845 (-) 441 WP_231951044.1 type IV pilin protein Machinery gene
  CKW04_RS04715 (SAMEA4504053_00961) - 970861..974361 (-) 3501 WP_058481382.1 pilus assembly protein -
  CKW04_RS04720 (SAMEA4504053_00962) - 974374..974883 (-) 510 WP_058481383.1 pilus assembly protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82954.50 Da        Isoelectric Point: 9.0820

>NTDB_id=1147222 CKW04_RS04705 WP_058481381.1 968078..970279(-) (comEC) [Legionella waltersii strain NCTC13017]
MEIVCFYLGILFVYTQEIYLIPALLLLYFLTPKYRLILYFLGACSVAWIHECIVFPKGLPEKQVIPYAIIEGIISSIPNQ
NTHKTQFHLSLQKFNDQAAKGVILLSWYNHPPKLKAGQTWRLKVKLKKPRNFKNPGSYNYTLFLSARHIHWTGYILPKGS
QLLSTTSNELSLLPLRERLANSIASLAHDKQIAAILEALTLNIATHIAPETWELFRRTGTIHLFGISGEHIAFIAGILFY
CCRWIWSRFPACCLCIPARSFAGVCSLIVAFMYSLLAGFEPPVQRALSGYFFFTLGCVGSQRFTPWQIWRYALFVVLCID
PHAVFMQGFYFSFGAVACLLITHQRWQLKGYQLKLALQLSCLIGLLPLSFFWYGYGSINGFIANLFAIPLVGFLIVPLAL
MTLLFSSQSWSWILMKPLSLLVSLLLKGLALTEYLSTLNINWSIQTAPMMLSLLFGIMMLAILPTKPFKHIAILWIVIPL
FPHQDSIKSGEALVNVLDVGQGLSVVIRTQNHVLVYDTGDQFFQGSDLGKMVVLPFLNSKGIKSIDAVVISHPDKDHMGG
LGSIEQSLPVDRLIVDDPDYYNRGLNCHTFHEWRWDKVTFKFFPIHEVLGKKNNHSCVLRVSNSVSSILLTGDIEAVAED
YLVRTYSNQLNSEVFIVPHHGSSTSSSYRFLLDVNPRYAIASLGFDNRFHFPHDKTTLKLKSLNIPFIRTDESGMVQIKL
PKNGHLYPPEVYS

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=1147222 CKW04_RS04705 WP_058481381.1 968078..970279(-) (comEC) [Legionella waltersii strain NCTC13017]
ATGGAAATTGTCTGCTTTTATTTAGGTATTTTATTTGTATATACCCAAGAAATCTATTTGATACCAGCTCTATTACTGCT
TTATTTCCTAACCCCGAAATACCGTTTAATTCTCTATTTCCTTGGAGCCTGCAGTGTTGCTTGGATACACGAGTGCATTG
TGTTTCCCAAAGGCCTTCCGGAAAAACAGGTTATTCCCTATGCAATCATTGAAGGAATAATCAGCTCGATTCCAAATCAA
AATACCCATAAAACCCAATTTCATCTTTCATTGCAAAAATTCAATGATCAAGCTGCAAAGGGAGTGATTTTACTGAGTTG
GTATAATCATCCACCAAAGCTTAAAGCTGGCCAAACTTGGCGCTTAAAGGTCAAGTTGAAAAAACCTAGGAATTTCAAAA
ACCCTGGAAGTTATAATTACACATTATTTTTATCTGCTAGACACATCCATTGGACTGGTTACATTCTTCCTAAGGGTAGT
CAATTACTCAGTACCACATCCAATGAATTATCCTTATTGCCGCTCCGTGAGCGCTTAGCGAATAGCATAGCTTCTTTGGC
GCATGACAAGCAAATTGCTGCAATTCTAGAAGCGTTAACCTTGAATATTGCTACCCATATCGCTCCAGAAACATGGGAGC
TGTTTAGAAGGACAGGGACAATTCACCTCTTTGGTATTTCAGGTGAACATATTGCATTCATTGCAGGGATCTTATTTTAT
TGCTGCAGATGGATATGGTCTCGATTTCCCGCTTGTTGCTTATGTATTCCAGCACGCTCCTTTGCTGGTGTTTGCAGTCT
TATTGTCGCCTTCATGTATTCACTCCTAGCTGGTTTTGAGCCTCCTGTGCAAAGAGCTTTATCGGGTTATTTTTTCTTCA
CATTAGGTTGTGTAGGAAGCCAACGATTCACCCCCTGGCAGATTTGGCGTTATGCACTGTTTGTGGTTCTCTGCATTGAT
CCTCATGCTGTATTCATGCAAGGGTTTTATTTTTCTTTTGGTGCAGTGGCATGTCTTTTAATCACTCATCAGCGATGGCA
GTTAAAAGGATATCAACTTAAGTTGGCTTTACAATTAAGTTGTCTTATTGGTTTATTGCCCTTAAGTTTTTTCTGGTATG
GCTATGGTTCTATTAATGGGTTTATTGCCAATCTATTTGCGATCCCTTTGGTTGGATTTTTGATTGTTCCTTTAGCCTTA
ATGACCTTGTTGTTCAGTTCACAGTCCTGGTCCTGGATACTGATGAAGCCGTTATCACTGTTGGTTAGTCTGTTGCTCAA
AGGTTTGGCTTTAACTGAGTATTTATCAACGTTAAACATCAATTGGAGCATTCAGACAGCCCCAATGATGTTGTCCTTAC
TGTTTGGAATCATGATGCTTGCTATTCTCCCTACAAAACCGTTTAAACACATCGCCATTCTTTGGATTGTTATTCCATTG
TTTCCCCATCAAGACAGCATTAAGTCTGGTGAGGCTCTAGTCAATGTCCTGGATGTGGGTCAAGGTTTATCCGTAGTGAT
TCGAACCCAAAATCATGTGTTGGTTTATGACACTGGGGATCAATTCTTTCAGGGCAGTGATTTGGGAAAAATGGTGGTTT
TACCTTTTTTAAATTCAAAAGGAATAAAAAGTATCGATGCTGTTGTAATCAGTCATCCTGATAAAGATCATATGGGTGGA
CTTGGCTCCATTGAACAATCTCTGCCCGTAGACAGGTTAATCGTTGATGATCCAGACTATTATAACCGAGGACTCAATTG
TCATACTTTCCATGAATGGCGATGGGACAAGGTTACCTTTAAATTTTTTCCCATCCACGAAGTCCTGGGTAAAAAAAACA
ATCATTCCTGTGTATTACGAGTAAGCAACTCTGTGAGCAGCATCTTACTGACTGGAGATATAGAAGCTGTCGCAGAAGAC
TATTTAGTTCGAACTTATTCGAACCAATTAAATTCTGAGGTATTCATTGTACCACATCATGGAAGCAGCACCTCTTCATC
TTATCGTTTTTTGCTGGATGTAAATCCCCGCTATGCCATTGCTTCGTTAGGCTTTGATAATCGATTCCATTTCCCACATG
ACAAAACAACTCTTAAGTTAAAATCCCTAAATATTCCCTTTATAAGAACGGACGAAAGTGGTATGGTGCAAATCAAACTA
CCAAAAAATGGGCATTTATACCCCCCTGAAGTGTATAGCTAA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(200-464)

Domain of unknown function (DUF4131) (DUF4131)

(23-155)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila strain Lp02

60.905

99.454

0.606
  comEC Legionella pneumophila strain ERS1305867

60.137

99.591

0.599

Multiple sequence alignment