Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   CKV83_RS04410 Genome accession   NZ_LT906439
Coordinates   950722..951525 (-) Length   267 a.a.
NCBI ID   WP_018372784.1    Uniprot ID   A0A239SRT0
Organism   Streptococcus merionis strain NCTC13788     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 945722..956525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS04400 (SAMEA4412692_00880) smc 946088..949621 (-) 3534 WP_018372782.1 chromosome segregation protein SMC -
  CKV83_RS04405 (SAMEA4412692_00881) rnc 949624..950319 (-) 696 WP_018372783.1 ribonuclease III -
  CKV83_RS04410 (SAMEA4412692_00882) vicX 950722..951525 (-) 804 WP_018372784.1 MBL fold metallo-hydrolase Regulator
  CKV83_RS04415 (SAMEA4412692_00883) micB 951512..952897 (-) 1386 WP_018372785.1 cell wall metabolism sensor histidine kinase VicK Regulator
  CKV83_RS04420 (SAMEA4412692_00884) micA 952890..953594 (-) 705 WP_018372786.1 response regulator YycF Regulator
  CKV83_RS11400 (SAMEA4412692_00885) - 953692..953844 (-) 153 WP_018372787.1 hypothetical protein -
  CKV83_RS04425 (SAMEA4412692_00887) - 954597..955316 (-) 720 WP_018372789.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29770.73 Da        Isoelectric Point: 5.9437

>NTDB_id=1147128 CKV83_RS04410 WP_018372784.1 950722..951525(-) (vicX) [Streptococcus merionis strain NCTC13788]
MEGFKYSILASGSTGNAFYLESDQKKILVDAGLTGKKVEQLLNEIGRSAADLDAIFITHEHSDHVKGVGILARKHGLDLY
ANEQTWKIIDEKNLIGAVPNEQKHIFQRDSMRVFGDLDIASFAVSHDAVAPQFYRFMKDGKSFVMLTDTGYVSDRMVGMI
ENADGYLIEANHDIEILRAGSYPWKTKQRILSDVGHLCNEDGAEAMIRSLGNKTKKIYLGHLSKENNIKELAHMTVFNQL
AQADMRVGTDFHLYDTSPDTATALTDI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1147128 CKV83_RS04410 WP_018372784.1 950722..951525(-) (vicX) [Streptococcus merionis strain NCTC13788]
ATGGAAGGATTTAAGTATAGTATTTTAGCTTCTGGCTCGACAGGCAATGCGTTCTACCTAGAATCAGATCAGAAAAAAAT
CCTTGTGGATGCGGGTTTGACTGGCAAAAAAGTAGAGCAGCTGCTCAATGAGATTGGTCGGAGTGCAGCAGATTTGGATG
CTATCTTTATCACACATGAGCATAGTGACCATGTCAAAGGCGTTGGGATTTTGGCTCGGAAACATGGACTGGATCTTTAC
GCCAACGAGCAGACTTGGAAGATTATTGATGAGAAGAATCTCATTGGCGCGGTGCCTAATGAACAAAAGCATATCTTTCA
GAGAGATAGCATGCGTGTTTTCGGGGATCTTGATATTGCCTCTTTTGCAGTTAGCCATGATGCAGTGGCACCTCAATTCT
ACCGTTTTATGAAAGACGGTAAGAGCTTTGTTATGTTGACCGATACGGGTTACGTTAGCGATCGTATGGTCGGCATGATT
GAGAATGCGGATGGTTATCTGATTGAGGCCAATCATGACATCGAAATTTTGCGGGCGGGAAGTTACCCGTGGAAGACCAA
GCAACGGATTCTTTCGGATGTTGGTCACTTGTGCAATGAGGATGGCGCAGAAGCCATGATTCGTAGTTTGGGAAATAAGA
CGAAGAAAATTTACCTCGGTCATTTATCTAAGGAAAACAATATTAAAGAATTGGCTCACATGACTGTCTTTAATCAACTG
GCTCAGGCAGATATGCGTGTCGGTACGGATTTCCATCTCTATGACACATCACCAGATACTGCCACAGCGTTGACAGACAT
ATAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(26-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239SRT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

69.057

99.251

0.685

Multiple sequence alignment