Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CKW02_RS20005 Genome accession   NZ_LT906438
Coordinates   3838387..3838932 (-) Length   181 a.a.
NCBI ID   WP_003215157.1    Uniprot ID   -
Organism   Bacillus pumilus strain NCTC10337     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3833387..3843932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW02_RS19980 (SAMEA4076707_04070) - 3833652..3834260 (-) 609 WP_034620304.1 alpha/beta hydrolase -
  CKW02_RS19985 (SAMEA4076707_04071) - 3834257..3835228 (-) 972 WP_034620306.1 ring-cleaving dioxygenase -
  CKW02_RS19990 (SAMEA4076707_04072) opuFB 3835420..3836937 (-) 1518 WP_003215320.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  CKW02_RS19995 (SAMEA4076707_04073) - 3836930..3837895 (-) 966 WP_034620308.1 ABC transporter ATP-binding protein -
  CKW02_RS20000 (SAMEA4076707_04074) rpsR 3838107..3838346 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  CKW02_RS20005 (SAMEA4076707_04075) ssbA 3838387..3838932 (-) 546 WP_003215157.1 single-stranded DNA-binding protein SsbA Machinery gene
  CKW02_RS20010 (SAMEA4076707_04076) rpsF 3838969..3839256 (-) 288 WP_003215073.1 30S ribosomal protein S6 -
  CKW02_RS20015 (SAMEA4076707_04077) ychF 3839365..3840465 (-) 1101 WP_003214682.1 redox-regulated ATPase YchF -
  CKW02_RS20020 (SAMEA4076707_04078) - 3840682..3840888 (-) 207 WP_003214565.1 DUF951 domain-containing protein -
  CKW02_RS20025 (SAMEA4076707_04079) - 3841174..3842493 (+) 1320 WP_095117930.1 hydrolase -
  CKW02_RS20030 (SAMEA4076707_04080) - 3842509..3842919 (+) 411 WP_003215287.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19706.26 Da        Isoelectric Point: 4.6109

>NTDB_id=1147112 CKW02_RS20005 WP_003215157.1 3838387..3838932(-) (ssbA) [Bacillus pumilus strain NCTC10337]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1147112 CKW02_RS20005 WP_003215157.1 3838387..3838932(-) (ssbA) [Bacillus pumilus strain NCTC10337]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTCGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment