Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   CKV86_RS03110 Genome accession   NZ_LT906437
Coordinates   521832..522443 (+) Length   203 a.a.
NCBI ID   WP_047923832.1    Uniprot ID   A0AAX2TSQ3
Organism   Neisseria gonorrhoeae strain NCTC13799     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516832..527443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV86_RS03080 (SAMEA4076765_00519) - 517163..517744 (-) 582 WP_047923823.1 superoxide dismutase -
  CKV86_RS03090 (SAMEA4076765_00520) dnaB 517908..519314 (+) 1407 WP_047923824.1 replicative DNA helicase -
  CKV86_RS03095 (SAMEA4076765_00521) pilH 519622..520284 (+) 663 WP_047923835.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CKV86_RS03100 (SAMEA4076765_00522) pilI 520316..520924 (+) 609 WP_047923834.1 type IV pilus modification protein PilV Machinery gene
  CKV86_RS03105 (SAMEA4076765_00523) pilJ 520921..521853 (+) 933 WP_048654306.1 PilW family protein Machinery gene
  CKV86_RS03110 (SAMEA4076765_00524) pilK 521832..522443 (+) 612 WP_047923832.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CKV86_RS03115 (SAMEA4076765_00525) pilL 522445..522918 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  CKV86_RS03120 (SAMEA4076765_00526) - 522988..523296 (-) 309 WP_025456241.1 AzlD family protein -
  CKV86_RS03125 - 523293..524004 (-) 712 Protein_526 AzlC family ABC transporter permease -
  CKV86_RS03130 (SAMEA4076765_00529) dut 524170..524622 (+) 453 WP_003701071.1 dUTP diphosphatase -
  CKV86_RS03135 (SAMEA4076765_00530) dapC 524694..525881 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  CKV86_RS03140 (SAMEA4076765_00531) yaaA 526037..526816 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22035.98 Da        Isoelectric Point: 8.4486

>NTDB_id=1147022 CKV86_RS03110 WP_047923832.1 521832..522443(+) (pilK) [Neisseria gonorrhoeae strain NCTC13799]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGKVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1147022 CKV86_RS03110 WP_047923832.1 521832..522443(+) (pilK) [Neisseria gonorrhoeae strain NCTC13799]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAAAGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956

Multiple sequence alignment