Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CKV86_RS03095 Genome accession   NZ_LT906437
Coordinates   519622..520284 (+) Length   220 a.a.
NCBI ID   WP_047923835.1    Uniprot ID   A0AAX2TSQ4
Organism   Neisseria gonorrhoeae strain NCTC13799     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514622..525284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV86_RS03060 (SAMEA4076765_00516) cysT 514742..515578 (-) 837 WP_047923822.1 sulfate ABC transporter permease subunit CysT -
  CKV86_RS03065 (SAMEA4076765_00517) - 515759..516091 (+) 333 WP_003687908.1 hypothetical protein -
  CKV86_RS03070 (SAMEA4076765_00518) - 516422..516931 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  CKV86_RS03080 (SAMEA4076765_00519) - 517163..517744 (-) 582 WP_047923823.1 superoxide dismutase -
  CKV86_RS03090 (SAMEA4076765_00520) dnaB 517908..519314 (+) 1407 WP_047923824.1 replicative DNA helicase -
  CKV86_RS03095 (SAMEA4076765_00521) pilH 519622..520284 (+) 663 WP_047923835.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CKV86_RS03100 (SAMEA4076765_00522) pilI 520316..520924 (+) 609 WP_047923834.1 type IV pilus modification protein PilV Machinery gene
  CKV86_RS03105 (SAMEA4076765_00523) pilJ 520921..521853 (+) 933 WP_048654306.1 PilW family protein Machinery gene
  CKV86_RS03110 (SAMEA4076765_00524) pilK 521832..522443 (+) 612 WP_047923832.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CKV86_RS03115 (SAMEA4076765_00525) pilL 522445..522918 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  CKV86_RS03120 (SAMEA4076765_00526) - 522988..523296 (-) 309 WP_025456241.1 AzlD family protein -
  CKV86_RS03125 - 523293..524004 (-) 712 Protein_526 AzlC family ABC transporter permease -
  CKV86_RS03130 (SAMEA4076765_00529) dut 524170..524622 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24357.84 Da        Isoelectric Point: 9.6051

>NTDB_id=1147019 CKV86_RS03095 WP_047923835.1 519622..520284(+) (pilH) [Neisseria gonorrhoeae strain NCTC13799]
MCTRKQQGFTLIELLIVMAIAAIMATIALPNMGGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NGCDFSKKGRGMLAFGDKNGNKAYDGDTKDVFLRNVVLNDTDDSRINYAFNHIAFGSSQPKADRVVWTFNQNGTFGYLPD
QNLKDNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1147019 CKV86_RS03095 WP_047923835.1 519622..520284(+) (pilH) [Neisseria gonorrhoeae strain NCTC13799]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGGGCGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTTCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATGGATGTGATTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TACTAAGGATGTTTTTCTCCGCAACGTGGTATTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

96.364

100

0.964

Multiple sequence alignment