Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CKV66_RS05665 Genome accession   NZ_LT906434
Coordinates   1214677..1215483 (+) Length   268 a.a.
NCBI ID   WP_085363178.1    Uniprot ID   A0AB38DQB3
Organism   Neisseria zoodegmatis strain NCTC12230     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1209677..1220483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV66_RS05655 (SAMEA4504057_01110) - 1212999..1213451 (+) 453 WP_085363176.1 isoprenylcysteine carboxylmethyltransferase family protein -
  CKV66_RS05660 (SAMEA4504057_01111) rluD 1213551..1214678 (-) 1128 WP_085363177.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CKV66_RS05665 (SAMEA4504057_01112) comL 1214677..1215483 (+) 807 WP_085363178.1 outer membrane protein assembly factor BamD Machinery gene
  CKV66_RS05670 (SAMEA4504057_01113) - 1215665..1216378 (+) 714 WP_085363179.1 phosphoglycolate phosphatase -
  CKV66_RS05675 (SAMEA4504057_01114) recX 1216451..1216900 (+) 450 WP_085356160.1 recombination regulator RecX Regulator
  CKV66_RS05680 (SAMEA4504057_01115) serC 1216997..1218103 (-) 1107 WP_085363180.1 phosphoserine transaminase -
  CKV66_RS05685 (SAMEA4504057_01116) - 1218414..1219184 (-) 771 WP_085363281.1 TatD family hydrolase -
  CKV66_RS05690 (SAMEA4504057_01117) - 1219294..1219812 (+) 519 WP_085363181.1 RDD family protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30997.87 Da        Isoelectric Point: 8.5278

>NTDB_id=1146939 CKV66_RS05665 WP_085363178.1 1214677..1215483(+) (comL) [Neisseria zoodegmatis strain NCTC12230]
MKKILLVISLGLALGGCAGTKGTIDKDAQITQDWSVEKLYAEAHDELNSSNYTRAIKLYEILESRFPNGRYAQQSQLDTA
YAYYKDDEPEKALAAIERFQRNHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFSQLIERYPD
SKYAADASERMAKLVDALGGNEIAVARYYMKRGAYLAAANRAQKIVERYQNTRFVEEALAIMESSYRKMNKPQLADDTRR
ILAQNFPNSPYLNKSWSDNNIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1146939 CKV66_RS05665 WP_085363178.1 1214677..1215483(+) (comL) [Neisseria zoodegmatis strain NCTC12230]
ATGAAAAAAATTCTTTTAGTTATTTCATTGGGTTTGGCTTTGGGCGGCTGTGCCGGCACCAAAGGCACGATTGATAAAGA
CGCGCAAATCACTCAGGATTGGTCGGTTGAAAAACTGTATGCTGAGGCTCACGACGAGTTAAACAGCAGCAATTATACGC
GAGCGATTAAGTTATACGAAATTTTGGAATCGCGCTTCCCCAACGGCCGCTACGCCCAACAATCCCAGCTCGACACGGCC
TACGCTTATTATAAAGACGACGAACCTGAAAAAGCTTTAGCCGCTATCGAACGCTTCCAACGCAACCACCCCCAACATCC
GAATATGGACTATGCCTTATATCTCAAAGGCTTGGTTCTGTTTAACGAAGACCAGTCGTTTTTAAACAAACTGGCTTCAC
AAGACTGGTCAGACCGCGACCCCAAAGCAAACCGCGATGCTTACCAAGCGTTTTCCCAGCTGATCGAACGCTATCCCGAC
AGCAAATACGCCGCCGATGCCAGCGAACGCATGGCTAAATTGGTAGATGCTTTGGGCGGCAATGAAATCGCCGTTGCGCG
TTACTACATGAAACGCGGCGCTTATTTGGCTGCGGCCAACCGCGCCCAAAAAATCGTCGAACGCTATCAAAACACCCGTT
TCGTGGAAGAGGCTTTGGCCATTATGGAATCTTCTTACCGCAAAATGAACAAACCGCAACTTGCCGACGACACCCGCCGC
ATTTTGGCGCAAAACTTCCCCAACAGCCCTTATCTGAACAAATCATGGTCGGATAACAACATTCCGTGGTGGCGCTATTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

78.652

99.627

0.784
  comL Neisseria gonorrhoeae MS11

78.652

99.627

0.784

Multiple sequence alignment