Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   CKV66_RS05675 Genome accession   NZ_LT906434
Coordinates   1216451..1216900 (+) Length   149 a.a.
NCBI ID   WP_085356160.1    Uniprot ID   A0AB38DR66
Organism   Neisseria zoodegmatis strain NCTC12230     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1211451..1221900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV66_RS05655 (SAMEA4504057_01110) - 1212999..1213451 (+) 453 WP_085363176.1 isoprenylcysteine carboxylmethyltransferase family protein -
  CKV66_RS05660 (SAMEA4504057_01111) rluD 1213551..1214678 (-) 1128 WP_085363177.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CKV66_RS05665 (SAMEA4504057_01112) comL 1214677..1215483 (+) 807 WP_085363178.1 outer membrane protein assembly factor BamD Machinery gene
  CKV66_RS05670 (SAMEA4504057_01113) - 1215665..1216378 (+) 714 WP_085363179.1 phosphoglycolate phosphatase -
  CKV66_RS05675 (SAMEA4504057_01114) recX 1216451..1216900 (+) 450 WP_085356160.1 recombination regulator RecX Regulator
  CKV66_RS05680 (SAMEA4504057_01115) serC 1216997..1218103 (-) 1107 WP_085363180.1 phosphoserine transaminase -
  CKV66_RS05685 (SAMEA4504057_01116) - 1218414..1219184 (-) 771 WP_085363281.1 TatD family hydrolase -
  CKV66_RS05690 (SAMEA4504057_01117) - 1219294..1219812 (+) 519 WP_085363181.1 RDD family protein -
  CKV66_RS05695 (SAMEA4504057_01118) - 1219989..1221407 (+) 1419 WP_197697465.1 mechanosensitive ion channel family protein -
  CKV66_RS05700 (SAMEA4504057_01119) nudB 1221415..1221864 (+) 450 WP_085363182.1 dihydroneopterin triphosphate diphosphatase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17538.91 Da        Isoelectric Point: 8.0563

>NTDB_id=1146940 CKV66_RS05675 WP_085356160.1 1216451..1216900(+) (recX) [Neisseria zoodegmatis strain NCTC12230]
MKPQKSLRARALDILARQEISRAELKRKLAPYAEHEDELDELLDEFADRHWQSDQRFAEAYIHSKSRQHGTLRLKQALQA
KGVDEETVREFLPSRESELDTAMAVLKKKFKQPAADMKEKQKQIRFLAYRGFDMDTIQTALKNCRYDDE

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1146940 CKV66_RS05675 WP_085356160.1 1216451..1216900(+) (recX) [Neisseria zoodegmatis strain NCTC12230]
ATGAAACCGCAAAAATCCCTACGCGCCCGAGCTTTAGATATACTTGCGCGACAAGAAATCAGTCGCGCCGAACTCAAGCG
CAAGCTTGCGCCGTATGCCGAGCATGAAGACGAGTTGGACGAGCTTTTGGACGAATTTGCCGATCGCCATTGGCAATCAG
ACCAACGCTTTGCAGAAGCCTATATCCACAGCAAAAGCAGACAACACGGTACACTGCGTTTGAAACAAGCATTGCAAGCC
AAAGGCGTGGATGAAGAAACCGTGCGTGAATTTCTGCCTTCGCGCGAAAGCGAGTTGGATACCGCAATGGCTGTGTTAAA
GAAGAAATTCAAACAACCTGCCGCAGATATGAAAGAAAAACAAAAGCAGATCCGTTTCCTCGCTTATCGGGGTTTTGATA
TGGATACGATTCAGACGGCCTTGAAAAACTGCCGTTATGACGATGAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

70.833

96.644

0.685

Multiple sequence alignment