Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | VCBK1071_RS12375 | Genome accession | NZ_LT897797 |
| Coordinates | 2665829..2666473 (+) | Length | 214 a.a. |
| NCBI ID | WP_001188318.1 | Uniprot ID | A0A085QXE6 |
| Organism | Vibrio cholerae isolate Vibrio cholerae str. BC1071 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
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Genomic Context
Location: 2660829..2671473
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VCBK1071_RS12360 (VCBK1071_02431) | - | 2661416..2662855 (-) | 1440 | WP_000743255.1 | PilN domain-containing protein | - |
| VCBK1071_RS12365 (VCBK1071_02432) | csrD | 2662868..2664880 (-) | 2013 | WP_001926798.1 | RNase E specificity factor CsrD | - |
| VCBK1071_RS12370 (VCBK1071_02433) | ssb | 2665004..2665537 (-) | 534 | WP_000168287.1 | single-stranded DNA-binding protein | Machinery gene |
| VCBK1071_RS12375 (VCBK1071_02434) | qstR | 2665829..2666473 (+) | 645 | WP_001188318.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| VCBK1071_RS12380 (VCBK1071_02435) | galU | 2666646..2667518 (+) | 873 | WP_001920788.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| VCBK1071_RS12385 (VCBK1071_02436) | uvrA | 2667674..2670496 (+) | 2823 | WP_000357696.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 214 a.a. Molecular weight: 24722.55 Da Isoelectric Point: 9.6461
>NTDB_id=1146680 VCBK1071_RS12375 WP_001188318.1 2665829..2666473(+) (qstR) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL
Nucleotide
Download Length: 645 bp
>NTDB_id=1146680 VCBK1071_RS12375 WP_001188318.1 2665829..2666473(+) (qstR) [Vibrio cholerae isolate Vibrio cholerae str. BC1071]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACTGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACTGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio cholerae strain A1552 |
98.598 |
100 |
0.986 |
| qstR | Vibrio campbellii strain DS40M4 |
52.336 |
100 |
0.523 |
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
51.628 |
100 |
0.519 |