Detailed information NTG1146534

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: CFBP1590_RS19025
• Genome accession: NZ_LT855380
• Coordinates: 4253318..4255534 (-)
• Length: 738 a.a.
• NCBI ID: WP_088235735.1
• Uniprot ID: A0A1Y6JNN8
• Organism: Pseudomonas viridiflava strain CFBP 1590 isolate E12-5
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4248318..4260534

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFBP1590_RS18995 (CFBP1590__3822)	murB	4249128..4250147 (-)	1020	WP_088235732.1	UDP-N-acetylmuramate dehydrogenase	-
CFBP1590_RS19000 (CFBP1590__3823)	kdsB	4250182..4250946 (-)	765	WP_088235733.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
CFBP1590_RS19005 (CFBP1590__3824)	-	4250943..4251128 (-)	186	WP_004884599.1	Trm112 family protein	-
CFBP1590_RS19010 (CFBP1590__3825)	lpxK	4251146..4252141 (-)	996	WP_088235734.1	tetraacyldisaccharide 4'-kinase	-
CFBP1590_RS19015 (CFBP1590__3826)	-	4252141..4252572 (-)	432	WP_004884601.1	biopolymer transporter ExbD	-
CFBP1590_RS19020 (CFBP1590__3827)	exbB	4252569..4253285 (-)	717	WP_074454496.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
CFBP1590_RS19025 (CFBP1590__3828)	comA	4253318..4255534 (-)	2217	WP_088235735.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
CFBP1590_RS19030 (CFBP1590__3829)	-	4256125..4257028 (+)	904	Protein_3736	DUF6708 domain-containing protein	-
CFBP1590_RS19035 (CFBP1590__3830)	-	4257265..4258155 (+)	891	WP_088235737.1	DUF6708 domain-containing protein	-
CFBP1590_RS19040 (CFBP1590__3831)	-	4258201..4258989 (-)	789	WP_004884611.1	ABC transporter permease	-
CFBP1590_RS19045 (CFBP1590__3832)	-	4258986..4259918 (-)	933	WP_004884614.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 738 a.a.
• Molecular weight: 80204.37 Da
• Isoelectric Point: 9.6985

>NTDB_id=1146534 CFBP1590_RS19025 WP_088235735.1 4253318..4255534(-) (comA) [Pseudomonas viridiflava strain CFBP 1590 isolate E12-5]
MRTGMIALALGLLALRFLPALPDTWLLLLMPAVALMLLPFRTYPLAFFLFGLTWACVSAQSALDDRLLSRLDGQTLWLQG
KVVGLPSAAEGVMRFELADGVSRRAKLPRLMRIAWYGGPEVRSGERWRLAVKLKRPGGLVNPEAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLSTTDWQVLQDTGTVHLLVISGQHISLLAGVIYAL
VGLLARWGLWPRTLPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVGLVLLWRLRFRHLGMTWPLLLSLNAVLVFEPL
VSLQPGFWLSFSAVGILILIFSGRLGAWSWVQSWTRAQWLIAVGLLPILMMLNLPISISGPLANLLAVPWVSVIVLPAAL
IGTLLLPVPIVGEGLLWLAGGALEGLFVFLGWMADLVPAWLPSTTPAWTLVLSLLGALLLLLPRGVPMRPLGWPLLLLCV
FPPLKSVPAGQVDVLQLDVGQGLSILLRTRHHTLLYDAGPRFGEFDIGQRVVVPAIRKSGVRHLDVMLLSHADSDHAGGA
PAVHKAFTVGRVLGGDIERLPPALGALRCENGEQWEWDGVVFSTWIWEQAPEGNAGSCMLSVDAGGERLLLTGDVDAEAE
QAAIDSGFDLRAQWLQAPHHGSRSSSSKPFLRAVMPKGVLISRGRNNAFGHPHPLVMARYKWNGIASYDSAELGAIRLQL
GTYGSPEAQRAQRRFWRD

Nucleotide

• Length: 2217 bp

>NTDB_id=1146534 CFBP1590_RS19025 WP_088235735.1 4253318..4255534(-) (comA) [Pseudomonas viridiflava strain CFBP 1590 isolate E12-5]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGCCTTTTGGCCCTGCGCTTCCTGCCTGCCTTGCCCGATACCTGGCTGTT
GCTGCTGATGCCCGCCGTGGCGTTGATGCTGCTGCCGTTTCGCACTTATCCGCTGGCCTTCTTTCTGTTCGGCTTGACGT
GGGCTTGCGTCTCGGCGCAATCGGCGCTGGATGATCGATTGCTGTCCCGGCTCGATGGTCAGACGTTGTGGCTGCAAGGC
AAGGTGGTCGGGTTGCCGAGTGCGGCTGAAGGTGTGATGCGTTTCGAGCTCGCGGATGGTGTATCACGACGGGCGAAATT
ACCCCGGCTGATGCGCATTGCCTGGTATGGCGGTCCTGAAGTGCGCAGCGGTGAGCGATGGCGGTTGGCGGTAAAGCTCA
AGCGGCCGGGCGGGCTGGTCAATCCCGAAGCGTTCGATTACGAGGCCTGGTTACTGGCCCAGCGTATCGGCGCGACCGGC
ACCGTGGTGGACGGTCAGTTGCTGGCACCGGCGCGTGCCGCCTGGCGCGATGCCATTCGCCAACGGCTGCTGGCCGTCGA
CGCGCAGGGGCGCGAAGGCGGTCTGGCGGCGCTGGTGCTGGGGGATGGCTCGGGCTTGTCGACCACTGACTGGCAAGTGC
TGCAGGACACCGGCACTGTGCATTTGCTGGTGATCTCCGGACAGCACATCAGCCTCTTGGCTGGCGTGATTTATGCGCTG
GTGGGCCTGCTGGCGCGCTGGGGACTGTGGCCGCGGACTCTGCCGTGGCTGCCCTGGGCGTGCGGTCTGGCGTTCGCGTC
GGCGCTGGGTTATGGGTTGCTGGCCGGGTTCGACGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGGGCTGGTTCTGCTCT
GGCGTTTGCGCTTTCGGCATCTGGGCATGACTTGGCCTTTATTGCTGTCGCTCAACGCCGTCCTGGTGTTCGAGCCGCTG
GTGAGTCTGCAGCCGGGGTTCTGGCTGTCGTTCTCGGCAGTCGGGATTCTGATCCTGATCTTTAGCGGCCGCCTCGGTGC
CTGGAGCTGGGTGCAGAGCTGGACGAGAGCCCAGTGGCTGATTGCCGTCGGCCTGCTGCCGATCCTGATGATGTTGAACC
TGCCGATCAGTATCAGCGGTCCGCTCGCCAATCTGCTGGCTGTGCCCTGGGTCAGCGTGATCGTTCTGCCTGCCGCATTG
ATTGGCACGCTGTTATTGCCCGTTCCGATCGTGGGCGAGGGTCTGTTGTGGCTGGCCGGTGGAGCGCTGGAAGGGCTGTT
CGTGTTTCTGGGCTGGATGGCGGACCTCGTGCCTGCCTGGCTGCCCAGTACCACGCCGGCCTGGACTCTGGTCCTGAGTC
TGCTGGGCGCGTTGCTGCTCCTGCTGCCCAGAGGTGTGCCGATGCGGCCTCTGGGCTGGCCGCTGCTGTTGCTGTGCGTG
TTTCCACCACTCAAGTCGGTGCCTGCCGGACAGGTTGACGTTCTGCAACTGGATGTCGGGCAGGGGCTGTCAATTCTGCT
GCGCACCCGGCACCACACGCTGCTGTATGACGCCGGGCCACGTTTCGGTGAGTTCGATATCGGTCAGCGGGTGGTCGTGC
CGGCCATTCGCAAGAGTGGGGTACGGCATCTGGACGTGATGCTGCTCAGTCACGCCGATTCCGATCATGCCGGAGGTGCA
CCGGCAGTCCACAAGGCGTTTACGGTCGGGCGTGTGCTGGGCGGAGATATCGAGCGCCTTCCGCCTGCACTCGGGGCACT
TCGTTGTGAAAACGGTGAGCAGTGGGAATGGGATGGCGTGGTGTTTTCGACCTGGATCTGGGAGCAGGCACCCGAAGGCA
ATGCAGGGTCCTGCATGCTGAGTGTCGACGCCGGTGGCGAGCGATTGTTGCTGACCGGCGATGTCGATGCCGAGGCCGAA
CAGGCGGCCATCGACAGTGGATTCGACCTGCGCGCCCAGTGGCTTCAGGCACCTCATCACGGCAGTCGGTCCTCGTCCTC
TAAACCGTTTCTGAGAGCGGTCATGCCGAAAGGTGTGCTGATTTCCCGCGGACGCAATAATGCGTTCGGCCACCCACACC
CGCTGGTCATGGCGCGTTATAAATGGAACGGTATCGCCAGCTACGACAGTGCCGAGCTGGGTGCCATCCGTTTGCAACTG
GGTACTTACGGCAGCCCTGAGGCACAGCGCGCGCAGCGACGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (22-166)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-678)

3D structure

• AlphaFold DB: A0A1Y6JNN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.57	97.019	0.607
comA	Ralstonia pseudosolanacearum GMI1000	32.118	100	0.37