Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CFBP1590_RS19020 Genome accession   NZ_LT855380
Coordinates   4252569..4253285 (-) Length   238 a.a.
NCBI ID   WP_074454496.1    Uniprot ID   A0AA46VYE7
Organism   Pseudomonas viridiflava strain CFBP 1590 isolate E12-5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4247569..4258285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP1590_RS18995 (CFBP1590__3822) murB 4249128..4250147 (-) 1020 WP_088235732.1 UDP-N-acetylmuramate dehydrogenase -
  CFBP1590_RS19000 (CFBP1590__3823) kdsB 4250182..4250946 (-) 765 WP_088235733.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CFBP1590_RS19005 (CFBP1590__3824) - 4250943..4251128 (-) 186 WP_004884599.1 Trm112 family protein -
  CFBP1590_RS19010 (CFBP1590__3825) lpxK 4251146..4252141 (-) 996 WP_088235734.1 tetraacyldisaccharide 4'-kinase -
  CFBP1590_RS19015 (CFBP1590__3826) - 4252141..4252572 (-) 432 WP_004884601.1 biopolymer transporter ExbD -
  CFBP1590_RS19020 (CFBP1590__3827) exbB 4252569..4253285 (-) 717 WP_074454496.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CFBP1590_RS19025 (CFBP1590__3828) comA 4253318..4255534 (-) 2217 WP_088235735.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CFBP1590_RS19030 (CFBP1590__3829) - 4256125..4257028 (+) 904 Protein_3736 DUF6708 domain-containing protein -
  CFBP1590_RS19035 (CFBP1590__3830) - 4257265..4258155 (+) 891 WP_088235737.1 DUF6708 domain-containing protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25834.42 Da        Isoelectric Point: 9.1401

>NTDB_id=1146533 CFBP1590_RS19020 WP_074454496.1 4252569..4253285(-) (exbB) [Pseudomonas viridiflava strain CFBP 1590 isolate E12-5]
MIEWRQFFKGVVTVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQDQKLDKEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKVDLKSLAKAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1146533 CFBP1590_RS19020 WP_074454496.1 4252569..4253285(-) (exbB) [Pseudomonas viridiflava strain CFBP 1590 isolate E12-5]
ATGATAGAGTGGCGCCAATTTTTCAAGGGAGTGGTCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGTTGCC
GATCATTTTGAGTTCCATCGCCGCTGCCGGCATCATCATCGAACGGCTCTGGACGCTGCGCGCCAGCCGTATCACACCGC
CGCACTTGCTGGGTCAGGTCTGGCAGTGGATTCAGGATCAGAAACTCGATAAAGAGAAGCTCAAGCAACTGCGCGCCGAT
TCGCCTCTGGGGGAAATCCTTGCGGCAGGCCTGGCCAACTCCAGGCATGGTCGCGAGATCATGAAAGAATGCATCGAGGA
AGCCGCAGCGCGGGTCATTCATGACCTGGAGCGTTACCTGAGTGCGCTGGGTTCGATTGCTGCGATGGCGCCGTTGCTGG
GTTTGTTGGGCACCGTGCTGGGCATGATCGATATCTTCGGATCTTTCAACAGCTCTGGAGCCACGGCCAACGCCGGTGTT
CTCGCGGGCGGTATTTCCAAGGCGCTGATCTGTACCGCGTCGGGCCTGATCGTGGCCATTCCGGCCATCTTTTTTCACCG
TTTTCTGCAAAGCCGTGTCGATGAGCTGGTGGTCGGCATGGAGCAGCAGGCCATTCGTCTGGTTGAGGTGGTGCAGGGCG
ACCGTGACGTCGATCTGATCGACGCCAAGGTCGACCTCAAGTCCCTGGCCAAGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

88.235

0.697

Multiple sequence alignment