Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A422_RS12380 Genome accession   NZ_CP006862
Coordinates   2465079..2465558 (-) Length   159 a.a.
NCBI ID   WP_012951949.1    Uniprot ID   -
Organism   Listeria monocytogenes serotype 1/2a str. 88-0478     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2460079..2470558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A422_RS12340 (A422_2470) - 2460554..2461873 (-) 1320 WP_012951942.1 PBSX family phage terminase large subunit -
  A422_RS12345 (A422_2471) terS 2461866..2462606 (-) 741 WP_012951943.1 phage terminase small subunit -
  A422_RS12350 (A422_2472) - 2462646..2462873 (-) 228 WP_012951944.1 hypothetical protein -
  A422_RS12355 (A422_2473) - 2463159..2463593 (-) 435 WP_012951945.1 ArpU family phage packaging/lysis transcriptional regulator -
  A422_RS15640 (A422_2474) - 2463616..2463741 (-) 126 WP_003727775.1 hypothetical protein -
  A422_RS12360 (A422_2475) - 2463734..2464117 (-) 384 WP_012951946.1 DUF2481 family protein -
  A422_RS12365 (A422_2476) - 2464121..2464525 (-) 405 WP_012951947.1 DUF1064 domain-containing protein -
  A422_RS12370 - 2464470..2464652 (-) 183 WP_031645468.1 hypothetical protein -
  A422_RS12375 (A422_2477) - 2464680..2465057 (-) 378 WP_012951948.1 hypothetical protein -
  A422_RS12380 (A422_2478) ssbA 2465079..2465558 (-) 480 WP_012951949.1 single-stranded DNA-binding protein Machinery gene
  A422_RS12385 (A422_2479) - 2465555..2465956 (-) 402 WP_012951950.1 hypothetical protein -
  A422_RS12390 (A422_2480) - 2465953..2466312 (-) 360 WP_012951951.1 hypothetical protein -
  A422_RS12395 (A422_2481) - 2466334..2466564 (-) 231 WP_031645470.1 DUF3850 domain-containing protein -
  A422_RS12400 (A422_2482) - 2466700..2467230 (-) 531 WP_012951953.1 hypothetical protein -
  A422_RS12405 (A422_2483) - 2467227..2467514 (-) 288 WP_012951954.1 hypothetical protein -
  A422_RS12410 (A422_2484) - 2467511..2468494 (-) 984 WP_012951955.1 phage replisome organizer N-terminal domain-containing protein -
  A422_RS12415 (A422_2485) - 2468511..2469170 (-) 660 WP_012951956.1 ERF family protein -
  A422_RS12420 (A422_2486) - 2469176..2469652 (-) 477 WP_012951957.1 siphovirus Gp157 family protein -
  A422_RS12425 (A422_2487) - 2469649..2469843 (-) 195 WP_003734953.1 hypothetical protein -
  A422_RS15645 (A422_2488) - 2469939..2470067 (-) 129 WP_003743356.1 hypothetical protein -
  A422_RS12430 (A422_2489) - 2470149..2470337 (-) 189 WP_003722564.1 gp45 family putative tail fiber system protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17709.43 Da        Isoelectric Point: 4.9838

>NTDB_id=114653 A422_RS12380 WP_012951949.1 2465079..2465558(-) (ssbA) [Listeria monocytogenes serotype 1/2a str. 88-0478]
MMNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRTFTNQNGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDSDGKRVFVTEVVAESVQFLESRNHAEGATSNNYQNQVNYSNNSQTSSYRADTSQKSDSFANEGKPIDINEDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=114653 A422_RS12380 WP_012951949.1 2465079..2465558(-) (ssbA) [Listeria monocytogenes serotype 1/2a str. 88-0478]
ATGATGAATCGTGTAGTACTTGTAGGACGATTAACAAAAGATCCGGATTTACGTTACACTCCAGCGGGCGCGGCTGTTGC
GACTTTTACATTAGCAGTAAATAGAACATTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGACGGTCGCGTACAGACTCGT
AATTATGAGGACAGCGACGGTAAACGTGTTTTCGTTACTGAGGTAGTTGCTGAATCAGTTCAATTCTTAGAGTCCAGAAA
CCACGCAGAAGGCGCTACATCGAATAATTATCAAAACCAAGTTAATTATTCAAATAACAGCCAAACAAGCTCATATCGAG
CGGATACGAGTCAGAAGAGCGATTCATTTGCAAACGAGGGCAAGCCGATAGATATTAATGAAGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.116

100

0.704
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.642
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.821

70.44

0.421

Multiple sequence alignment