Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CFBP1590_RS04855 Genome accession   NZ_LT855380
Coordinates   1005606..1006946 (-) Length   446 a.a.
NCBI ID   WP_088234569.1    Uniprot ID   -
Organism   Pseudomonas viridiflava strain CFBP 1590 isolate E12-5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1000606..1011946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP1590_RS04845 (CFBP1590__1027) - 1003741..1004142 (+) 402 WP_088234567.1 type IV pilin protein -
  CFBP1590_RS04850 (CFBP1590__1028) thiO 1004170..1005282 (+) 1113 WP_088234568.1 glycine oxidase ThiO -
  CFBP1590_RS04855 (CFBP1590__1029) pilR 1005606..1006946 (-) 1341 WP_088234569.1 sigma-54 dependent transcriptional regulator Regulator
  CFBP1590_RS04860 (CFBP1590__1030) pilS 1006949..1008541 (-) 1593 WP_088234570.1 PAS domain-containing sensor histidine kinase Regulator
  CFBP1590_RS04865 - 1008531..1008770 (-) 240 WP_080665289.1 PP0621 family protein -
  CFBP1590_RS04870 (CFBP1590__1031) - 1008894..1009916 (-) 1023 WP_004884073.1 outer membrane protein assembly factor BamD -
  CFBP1590_RS04875 (CFBP1590__1032) rluD 1010066..1011028 (+) 963 WP_004884074.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CFBP1590_RS04880 (CFBP1590__1033) pgeF 1011025..1011753 (+) 729 WP_088234571.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49898.19 Da        Isoelectric Point: 6.4256

>NTDB_id=1146524 CFBP1590_RS04855 WP_088234569.1 1005606..1006946(-) (pilR) [Pseudomonas viridiflava strain CFBP 1590 isolate E12-5]
MTPRQKILIVDDEPDIRELLEITLGRMKLDTRSACNVAEARQCLAREAFDLCLTDMRLPDGNGLELVQHIQQNFAHVPVA
MITAHGSLDTAIHALKAGAFDFLTKPVDLGRLRELVNSALRLTPVVQPIRALDNRLLGDSPPMRILRGQIAKLARSQAPV
YISGESGSGKELVARLIHEQGPRGEKPFVPVNCGAIPSDLMESEFFGHRKGSFTGAHEDKPGLFQAAQNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQLAAI
VLQRLATNSGLPAARLDAQALDTLKNYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESARPQESDGPNLADIDNLE
DYLEGIERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1146524 CFBP1590_RS04855 WP_088234569.1 1005606..1006946(-) (pilR) [Pseudomonas viridiflava strain CFBP 1590 isolate E12-5]
ATGACCCCACGGCAAAAGATCCTGATCGTCGATGATGAGCCGGACATTCGCGAACTCCTGGAGATCACTCTGGGCCGGAT
GAAGCTCGACACCCGCAGCGCCTGCAATGTCGCCGAGGCACGCCAGTGTCTGGCTCGAGAAGCATTCGACCTGTGCCTGA
CGGACATGCGCCTGCCGGATGGCAACGGCCTGGAGCTGGTGCAGCATATCCAGCAGAACTTCGCTCACGTCCCGGTGGCG
ATGATCACCGCGCATGGCAGTCTGGACACCGCTATCCACGCGCTCAAGGCCGGTGCGTTCGACTTCCTGACCAAGCCGGT
GGACCTCGGTCGCCTGCGTGAGCTGGTCAACAGCGCGCTGCGCCTTACGCCCGTCGTGCAGCCTATACGCGCTCTGGACA
ACCGCCTGCTGGGCGACTCGCCGCCCATGCGCATACTGCGCGGCCAGATCGCCAAACTGGCGCGCAGTCAGGCCCCCGTT
TACATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCCAGGTTGATTCACGAACAAGGCCCACGTGGAGAAAAACC
CTTCGTGCCGGTCAACTGCGGCGCCATTCCTTCCGACCTGATGGAAAGCGAATTCTTCGGGCATCGCAAAGGCAGCTTCA
CCGGTGCCCATGAAGACAAGCCGGGGCTGTTCCAGGCGGCGCAGAACGGCACGCTGTTTCTGGACGAGGTGGCCGATCTG
CCGCTGGCCATGCAGGTCAAACTGCTGCGCGCGATACAGGAGAAGTCCATCCGCAGCGTCGGCGGCCAGCAGGAACAGGT
GGTGGATGTACGGATTCTCTGTGCAACCCATAAGGACCTGAACGTAGAGGTGGCCGCAGGACGCTTCCGGCAGGATTTGT
ATTACCGATTGAACGTCATCGAGTTGCGCGTACCGTCGCTGCGTGAGCGTCGTGAAGACATCGACCAACTGGCCGCCATC
GTCCTGCAGCGTCTGGCGACCAACAGCGGGCTGCCCGCCGCCAGACTCGACGCCCAGGCACTGGATACGCTGAAAAACTA
TCGTTTTCCCGGCAACGTTCGTGAGCTGGAGAACATGCTGGAGCGCGCCTACACGCTGTGCGAGAACGACGAAATCCATG
CGTCCGACCTGCGCCTGACCGAGTCTGCAAGACCACAGGAAAGCGACGGCCCGAACCTGGCCGACATCGACAATCTGGAA
GACTATCTGGAAGGCATCGAGCGCAAACTGATTCTTCAGGCCCTGGAAGAAACCCGCTGGAACCGCACAGCGGCGGCCCA
GCGACTGAGCCTGTCATTCAGGTCGATGCGTTATCGGTTGAAGAAGCTGGGACTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.684

99.327

0.791
  pilR Acinetobacter baumannii strain A118

49.676

100

0.516

Multiple sequence alignment