Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CFBP1590_RS04860 Genome accession   NZ_LT855380
Coordinates   1006949..1008541 (-) Length   530 a.a.
NCBI ID   WP_088234570.1    Uniprot ID   A0A1Y6JFA3
Organism   Pseudomonas viridiflava strain CFBP 1590 isolate E12-5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1001949..1013541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP1590_RS04845 (CFBP1590__1027) - 1003741..1004142 (+) 402 WP_088234567.1 type IV pilin protein -
  CFBP1590_RS04850 (CFBP1590__1028) thiO 1004170..1005282 (+) 1113 WP_088234568.1 glycine oxidase ThiO -
  CFBP1590_RS04855 (CFBP1590__1029) pilR 1005606..1006946 (-) 1341 WP_088234569.1 sigma-54 dependent transcriptional regulator Regulator
  CFBP1590_RS04860 (CFBP1590__1030) pilS 1006949..1008541 (-) 1593 WP_088234570.1 PAS domain-containing sensor histidine kinase Regulator
  CFBP1590_RS04865 - 1008531..1008770 (-) 240 WP_080665289.1 PP0621 family protein -
  CFBP1590_RS04870 (CFBP1590__1031) - 1008894..1009916 (-) 1023 WP_004884073.1 outer membrane protein assembly factor BamD -
  CFBP1590_RS04875 (CFBP1590__1032) rluD 1010066..1011028 (+) 963 WP_004884074.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CFBP1590_RS04880 (CFBP1590__1033) pgeF 1011025..1011753 (+) 729 WP_088234571.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58423.54 Da        Isoelectric Point: 7.0355

>NTDB_id=1146525 CFBP1590_RS04860 WP_088234570.1 1006949..1008541(-) (pilS) [Pseudomonas viridiflava strain CFBP 1590 isolate E12-5]
MTAEPLSLGSAQAQRILRLYHLYRLVIGVLLVSLISSSLDTELLQMANPNLFRAGCWLYLVSNILVVVLLERPSRQSHLF
SLALADAIMLSGLFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISLGTPSVSSDYVQAGLLG
AMCFAAAMLVQALTARMLNSEVLAKQRAADVDNLEELNALILQRMRTGILVLDARRQVLMANQGALNLLGHEQLVGEVID
HYCPQLVDRLRHWLINPVMVPRSLSTSAIGPELQPSFAAVNRGDQLQTLIFLEDLSQVAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELTAPDRRLGQIIHDQSRRINLVIENVLQLSRRREAQRELLDLKNWLENFVAEFRSTALPD
QRVETEIGVGMLTTRMDPEQLNQVVTNLLQNGLRYSRQHHSTAQVLLRLYHDRKSDLPTLEVLDDGPGVSEKHLSRLFEP
FFTTESKGTGLGLYLSRELCESNQAHLDYAPREGGGSCMRITFAHPFKPS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=1146525 CFBP1590_RS04860 WP_088234570.1 1006949..1008541(-) (pilS) [Pseudomonas viridiflava strain CFBP 1590 isolate E12-5]
GTGACCGCTGAGCCCCTTTCGCTCGGCAGTGCCCAAGCGCAACGGATCCTGCGGCTTTATCACCTTTATCGCCTCGTCAT
CGGCGTCCTGCTGGTATCGCTGATTTCCAGCAGCCTGGACACCGAACTGTTGCAGATGGCCAACCCGAACCTGTTTCGCG
CAGGCTGCTGGCTGTATCTGGTGTCCAACATTCTGGTAGTGGTGCTGCTGGAGCGGCCGAGTCGTCAGTCTCACCTCTTC
AGTCTGGCGCTGGCAGACGCGATCATGCTGTCTGGCCTTTTCTACGCAGCAGGCGGTCCTTCGAGTGGTATCGGCAACCT
GCTGATCGCCTCGGTCGCGATCAGCAATGTGCTGTTGCGTGGCCGCATCGGGCTGCTGATCGCGGCAGTCTCGGCCATCG
GCATCATCTACCTGACCTTCTACATCAGCCTCGGGACGCCATCGGTTTCCAGCGACTACGTGCAGGCTGGCCTACTGGGT
GCCATGTGCTTCGCGGCCGCCATGCTGGTGCAGGCACTCACGGCGCGCATGCTGAACAGCGAAGTGCTGGCCAAGCAGCG
GGCTGCCGATGTCGATAACCTCGAAGAACTCAACGCCCTGATTCTGCAACGCATGCGCACCGGCATTCTGGTACTGGATG
CGCGCCGTCAGGTGCTGATGGCCAATCAGGGCGCGCTGAACCTGCTCGGGCATGAGCAACTGGTCGGCGAAGTGATCGAC
CATTACTGCCCGCAATTGGTGGATCGCCTGCGCCACTGGCTGATCAACCCGGTCATGGTGCCACGCAGTCTCTCGACTTC
TGCCATCGGGCCAGAGCTGCAACCCAGCTTTGCGGCGGTCAACCGAGGCGATCAGTTGCAGACCCTGATTTTCCTGGAGG
ACCTGTCGCAGGTCGCCCATCAGGCACAGCAGCTCAAGCTTGCCGCACTGGGCCGCCTGACCGCCGGCATCGCTCATGAA
ATCCGCAACCCGCTCGGCGCGGTCAGCCATGCAGCGCAATTGCTGAACGAGTCGGAAGAATTGACAGCACCGGACCGTCG
TCTGGGGCAGATCATTCATGACCAGTCACGGCGGATCAATCTGGTTATCGAGAACGTGCTGCAACTGTCCAGACGACGCG
AAGCCCAGCGCGAACTGCTTGACCTGAAAAACTGGCTGGAGAACTTCGTGGCGGAGTTTCGCAGCACCGCCCTGCCTGAC
CAGCGGGTCGAGACCGAAATCGGTGTCGGCATGCTGACCACGCGCATGGACCCCGAGCAGTTGAATCAGGTGGTCACCAA
CCTGCTGCAGAACGGCCTGCGCTACAGTCGTCAGCACCACTCCACCGCGCAGGTGCTGCTGAGGCTGTATCACGACCGCA
AAAGCGATCTGCCGACGCTAGAGGTTCTGGATGACGGCCCCGGCGTCAGCGAGAAGCACCTGAGCAGATTGTTCGAACCG
TTCTTCACCACCGAAAGCAAAGGGACGGGCCTTGGCCTCTACCTGTCGCGCGAGTTATGCGAAAGCAATCAGGCCCACCT
GGACTACGCCCCTCGGGAAGGCGGCGGCAGTTGCATGCGGATTACCTTCGCCCACCCGTTCAAACCGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(202-252)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6JFA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.394

100

0.615

Multiple sequence alignment