Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LZ3411_RS00050 Genome accession   NZ_LT854705
Coordinates   11030..11617 (+) Length   195 a.a.
NCBI ID   WP_087741225.1    Uniprot ID   A0A1Y6JTC7
Organism   Levilactobacillus zymae strain ACA-DC 3411     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6030..16617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ3411_RS00030 (LZ3411_0006) gyrA 6997..9537 (+) 2541 WP_087741222.1 DNA gyrase subunit A -
  LZ3411_RS00035 (LZ3411_0007) - 9723..9911 (+) 189 WP_087741223.1 hypothetical protein -
  LZ3411_RS00040 (LZ3411_0008) - 10005..10490 (+) 486 WP_087741224.1 hypothetical protein -
  LZ3411_RS00045 (LZ3411_0009) rpsF 10693..10989 (+) 297 WP_057732953.1 30S ribosomal protein S6 -
  LZ3411_RS00050 (LZ3411_0010) ssb 11030..11617 (+) 588 WP_087741225.1 single-stranded DNA-binding protein Machinery gene
  LZ3411_RS00055 (LZ3411_0011) rpsR 11647..11883 (+) 237 WP_045807732.1 30S ribosomal protein S18 -
  LZ3411_RS00060 (LZ3411_0012) - 12321..13010 (+) 690 WP_087741226.1 YoaK family protein -
  LZ3411_RS00065 (LZ3411_0013) - 13075..14259 (-) 1185 WP_087741227.1 metal-dependent hydrolase family protein -
  LZ3411_RS00070 (LZ3411_0014) - 14269..15876 (-) 1608 WP_087741228.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21230.90 Da        Isoelectric Point: 5.1959

>NTDB_id=1146469 LZ3411_RS00050 WP_087741225.1 11030..11617(+) (ssb) [Levilactobacillus zymae strain ACA-DC 3411]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNQQGEREADFVSCVIWRKSAENFAQYMHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFSFLEPRSSNRNAAPQGGNNYGAPVNNAPQNNQTQNNNPFTSGANNGPQANNHPNPAPSAP
AGNNQNTNGNNGSNANDPFANTGDSIDISDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1146469 LZ3411_RS00050 WP_087741225.1 11030..11617(+) (ssb) [Levilactobacillus zymae strain ACA-DC 3411]
ATGATCAACCGAGTAGTACTTACTGGCCGACTGACACGGGACGTTGACTTACGATACACCCAAGGCGGTGCTGCTGTTGC
CACTTTTACGTTGGCCGTTGATCGGCGGTTCACCAACCAGCAAGGTGAGCGGGAAGCTGATTTCGTTAGTTGTGTGATTT
GGCGCAAGTCCGCGGAGAATTTTGCCCAATACATGCATAAAGGGTCCTTGGTCGGCATCGAAGGCCGTATCCAAACCCGG
AACTACGAAAACCAGCAGGGCCAACGGGTCTACGTGACCGAAGTGGTCGTCGAAAACTTTTCCTTCTTGGAACCTCGTTC
GAGCAATCGTAACGCGGCGCCTCAAGGTGGGAACAATTACGGCGCTCCTGTGAATAACGCACCTCAGAATAATCAGACTC
AGAATAACAATCCGTTTACCAGCGGTGCCAACAATGGCCCGCAGGCGAACAACCACCCGAACCCCGCCCCAAGTGCGCCG
GCCGGGAACAACCAGAACACTAACGGCAACAATGGTAGCAATGCCAACGATCCGTTTGCGAATACTGGGGACTCGATTGA
TATTTCCGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6JTC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.868

100

0.585
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.897

100

0.559

Multiple sequence alignment