Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | BCM300_RS00245 | Genome accession | NZ_LT837687 |
| Coordinates | 42072..43208 (+) | Length | 378 a.a. |
| NCBI ID | WP_089086477.1 | Uniprot ID | A0A238GTD4 |
| Organism | Helicobacter pylori isolate BCM-300 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 37072..48208
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCM300_RS00210 (BCM300_00040) | panD | 37499..37852 (+) | 354 | WP_000142286.1 | aspartate 1-decarboxylase | - |
| BCM300_RS00215 (BCM300_00041) | - | 37855..38157 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| BCM300_RS00220 (BCM300_00042) | - | 38157..39161 (+) | 1005 | WP_089086474.1 | PDZ domain-containing protein | - |
| BCM300_RS00225 (BCM300_00043) | comB6 | 39169..40224 (+) | 1056 | WP_089086475.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| BCM300_RS00230 (BCM300_00044) | comB7 | 40240..40353 (+) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| BCM300_RS00235 (BCM300_00045) | comB8 | 40350..41093 (+) | 744 | WP_000660557.1 | type IV secretion system protein | Machinery gene |
| BCM300_RS00240 (BCM300_00046) | comB9 | 41093..42079 (+) | 987 | WP_089086476.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| BCM300_RS00245 (BCM300_00047) | comB10 | 42072..43208 (+) | 1137 | WP_089086477.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| BCM300_RS00250 (BCM300_00048) | - | 43278..44690 (+) | 1413 | WP_089086478.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| BCM300_RS00255 (BCM300_00049) | gmd | 44731..45876 (+) | 1146 | WP_089086479.1 | GDP-mannose 4,6-dehydratase | - |
| BCM300_RS00260 (BCM300_00050) | - | 45869..46801 (+) | 933 | WP_001002481.1 | GDP-L-fucose synthase family protein | - |
| BCM300_RS08345 | - | 46829..47038 (-) | 210 | Protein_44 | anthranilate synthase component I | - |
| BCM300_RS08455 | - | 47189..47482 (-) | 294 | WP_099167445.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42184.68 Da Isoelectric Point: 9.7473
>NTDB_id=1146331 BCM300_RS00245 WP_089086477.1 42072..43208(+) (comB10) [Helicobacter pylori isolate BCM-300]
MNKWLKGAIVFIGGFATITTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKINTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDTATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAIVFIGGFATITTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKINTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDTATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=1146331 BCM300_RS00245 WP_089086477.1 42072..43208(+) (comB10) [Helicobacter pylori isolate BCM-300]
GTGAATAAGTGGCTTAAAGGGGCGATTGTTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGATGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCTAAAGACGCCACCATTAAAGCCTTACAAGAACAACTCAAAGCC
GCTTTAAAAGCCTTAAATTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTACTAGCCCTCCCATGGATCCAAAAAT
AAACACAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAAGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGAAGCAGGGTTTTCATTTCGCCCAATACTGATATATTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CAGAGTTTTTGAAGTGA
GTGAATAAGTGGCTTAAAGGGGCGATTGTTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGATGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCTAAAGACGCCACCATTAAAGCCTTACAAGAACAACTCAAAGCC
GCTTTAAAAGCCTTAAATTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTACTAGCCCTCCCATGGATCCAAAAAT
AAACACAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAAGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGAAGCAGGGTTTTCATTTCGCCCAATACTGATATATTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CAGAGTTTTTGAAGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.561 |
100 |
0.966 |