Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | BCM300_RS00230 | Genome accession | NZ_LT837687 |
| Coordinates | 40240..40353 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217877.1 | Uniprot ID | A0A1A9H2U2 |
| Organism | Helicobacter pylori isolate BCM-300 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 35240..45353
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCM300_RS00205 (BCM300_00039) | - | 35281..37509 (+) | 2229 | WP_089086473.1 | AAA family ATPase | - |
| BCM300_RS00210 (BCM300_00040) | panD | 37499..37852 (+) | 354 | WP_000142286.1 | aspartate 1-decarboxylase | - |
| BCM300_RS00215 (BCM300_00041) | - | 37855..38157 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| BCM300_RS00220 (BCM300_00042) | - | 38157..39161 (+) | 1005 | WP_089086474.1 | PDZ domain-containing protein | - |
| BCM300_RS00225 (BCM300_00043) | comB6 | 39169..40224 (+) | 1056 | WP_089086475.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| BCM300_RS00230 (BCM300_00044) | comB7 | 40240..40353 (+) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| BCM300_RS00235 (BCM300_00045) | comB8 | 40350..41093 (+) | 744 | WP_000660557.1 | type IV secretion system protein | Machinery gene |
| BCM300_RS00240 (BCM300_00046) | comB9 | 41093..42079 (+) | 987 | WP_089086476.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| BCM300_RS00245 (BCM300_00047) | comB10 | 42072..43208 (+) | 1137 | WP_089086477.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| BCM300_RS00250 (BCM300_00048) | - | 43278..44690 (+) | 1413 | WP_089086478.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4291.23 Da Isoelectric Point: 9.3572
>NTDB_id=1146328 BCM300_RS00230 WP_001217877.1 40240..40353(+) (comB7) [Helicobacter pylori isolate BCM-300]
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=1146328 BCM300_RS00230 WP_001217877.1 40240..40353(+) (comB7) [Helicobacter pylori isolate BCM-300]
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAGAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAGAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
97.297 |
100 |
0.973 |