Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BUC38_RS10295 Genome accession   NZ_LT671674
Coordinates   2112936..2113430 (-) Length   164 a.a.
NCBI ID   WP_044691714.1    Uniprot ID   A0A0Z8JN54
Organism   Streptococcus suis strain LS9N     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2107936..2118430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS10280 - 2110651..2111595 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  BUC38_RS10285 - 2111611..2112267 (+) 657 WP_044691716.1 DUF1129 domain-containing protein -
  BUC38_RS10290 rpsR 2112664..2112903 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  BUC38_RS10295 ssb 2112936..2113430 (-) 495 WP_044691714.1 single-stranded DNA-binding protein Machinery gene
  BUC38_RS10300 rpsF 2113442..2113732 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  BUC38_RS10305 - 2113904..2114893 (-) 990 WP_044691712.1 lipoate--protein ligase -
  BUC38_RS10310 - 2114977..2116416 (-) 1440 WP_044691710.1 6-phospho-beta-glucosidase -
  BUC38_RS10315 - 2116431..2117030 (-) 600 WP_044691707.1 histidine phosphatase family protein -
  BUC38_RS10320 - 2117042..2117644 (-) 603 WP_044691705.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18148.89 Da        Isoelectric Point: 4.7294

>NTDB_id=1146011 BUC38_RS10295 WP_044691714.1 2112936..2113430(-) (ssb) [Streptococcus suis strain LS9N]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSYASGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1146011 BUC38_RS10295 WP_044691714.1 2112936..2113430(-) (ssb) [Streptococcus suis strain LS9N]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACTGGTCGTATTCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCATATGCTAGCGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8JN54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.824

100

0.61
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment