Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   BUC38_RS03495 Genome accession   NZ_LT671674
Coordinates   688480..689283 (+) Length   267 a.a.
NCBI ID   WP_044689307.1    Uniprot ID   A0A0Z8I2F5
Organism   Streptococcus suis strain LS9N     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 683480..694283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS03470 - 683909..684607 (-) 699 WP_004298848.1 amino acid ABC transporter permease -
  BUC38_RS03475 - 684622..685461 (-) 840 WP_044689304.1 transporter substrate-binding domain-containing protein -
  BUC38_RS03480 - 685472..686233 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  BUC38_RS03485 micA 686427..687131 (+) 705 WP_044689305.1 response regulator YycF Regulator
  BUC38_RS03490 micB 687124..688473 (+) 1350 WP_024379730.1 cell wall metabolism sensor histidine kinase VicK Regulator
  BUC38_RS03495 vicX 688480..689283 (+) 804 WP_044689307.1 MBL fold metallo-hydrolase Regulator
  BUC38_RS03500 vga(F) 689815..691200 (+) 1386 WP_044689309.1 ABC-F type ribosomal protection protein Vga(F) -
  BUC38_RS03505 pbp2b 691292..693364 (+) 2073 WP_044689312.1 penicillin-binding protein PBP2B -
  BUC38_RS03510 recR 693373..693969 (+) 597 WP_002935848.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29573.66 Da        Isoelectric Point: 5.9824

>NTDB_id=1145993 BUC38_RS03495 WP_044689307.1 688480..689283(+) (vicX) [Streptococcus suis strain LS9N]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMAGIV
ANADAYLIESNHDVEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1145993 BUC38_RS03495 WP_044689307.1 688480..689283(+) (vicX) [Streptococcus suis strain LS9N]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCAGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATCGATCGAAAACCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGGGCTATGAAGACTTTTGGTGACCTAGATATTGAGTCCTTTGGTGTCAGTCATGATGCAGCCTGTCCGCAATTTT
ATCGCTTTATGAAGGATGACAAGTCCTTTGTCATGCTGACGGATACTGGTTATGTCAGCGATCGAATGGCTGGGATTGTA
GCCAATGCTGATGCTTATTTGATTGAATCCAATCATGATGTCGAAATCTTACGTTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTTTGTCTGATAAGGGGCACCTCTGCAATGAAGATGGAGCAGATGCCATGATTCGGACCCTGGGTAATCGGA
CTAAGAAAATCTATCTTGGTCACTTGTCCAAGGAAAACAATATTAAAGAACTGGCCCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAGGTCTATGATACCTCGCCAGATACAGCGACGCCATTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8I2F5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772

Multiple sequence alignment