Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   BUC38_RS03430 Genome accession   NZ_LT671674
Coordinates   675043..676047 (+) Length   334 a.a.
NCBI ID   WP_044689300.1    Uniprot ID   A0A0Z8I1V1
Organism   Streptococcus suis strain LS9N     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 670043..681047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS03410 - 670672..671109 (+) 438 WP_029178154.1 CoA-binding protein -
  BUC38_RS03415 - 671405..672247 (-) 843 WP_044689297.1 DUF975 family protein -
  BUC38_RS03420 tgt 672567..673709 (+) 1143 WP_044689298.1 tRNA guanosine(34) transglycosylase Tgt -
  BUC38_RS03425 - 673749..674834 (-) 1086 WP_044689299.1 Xaa-Pro peptidase family protein -
  BUC38_RS03430 ccpA 675043..676047 (+) 1005 WP_044689300.1 catabolite control protein A Regulator
  BUC38_RS03435 - 676744..677742 (+) 999 WP_004298832.1 glycosyltransferase -
  BUC38_RS03440 - 677743..679056 (+) 1314 WP_044689301.1 glycosyltransferase family 4 protein -
  BUC38_RS03445 - 679071..679445 (+) 375 WP_004298835.1 hypothetical protein -
  BUC38_RS03450 - 679703..680020 (+) 318 WP_029176487.1 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36856.07 Da        Isoelectric Point: 5.8165

>NTDB_id=1145990 BUC38_RS03430 WP_044689300.1 675043..676047(+) (ccpA) [Streptococcus suis strain LS9N]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
RVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNA
GATAAYVAEDEIAAGLLNGVSDMGIKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1145990 BUC38_RS03430 WP_044689300.1 675043..676047(+) (ccpA) [Streptococcus suis strain LS9N]
ATGTTAAACACTGATGATACGGTTACGATTTACGATGTCGCCCGTGAAGCAGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGACCGTTTGGATTATCGTCCAA
ATGCTGTTGCGCGTGGCTTGGCAAGTAAAAAAACGACAACTGTAGGGGTTGTGATTCCAAATATTGCTAACGCCTATTTT
GCAACCTTGGCCAAAGGTATCGATGATATTGCCGATATGTACAAATACAATATCGTCCTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATCAATGTGGTAAATACCCTATTCTCAAAACAGGTGGACGGAATCATTTTCATGGGCTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGACTTGGAGCACCAATTACCT
AGAGTCAATATTGACTATGCTGCCGCTAGTGTTGATGCAGTCAATCTATTAGCTAAGAACAACAAGAAAATTGCCTTTGT
ATCAGGACCGCTTGTAGATGACATCAACGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGCTTGAAGGACAACGGAATCG
AGTTTAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAGCAGAACGTATTTTGAATGCC
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCAGGTCTATTGAACGGTGTTAGTGATATGGGCATCAAGGT
TCCAGAAGACTTTGAAATCATTACAAGTGATGATTCCCTAGTGACCAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AACCACTATATGATATTGGCGCAATTGCTATGCGCATGCTTACCAAAATCATGCACAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCACGGAATCAAAGTACGGAAATCAACTAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(9-54)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8I1V1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.58

99.701

0.793
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.979

99.701

0.787
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.61

99.102

0.581

Multiple sequence alignment