Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BT137_RS11115 Genome accession   NZ_LT632617
Coordinates   2460384..2461088 (+) Length   234 a.a.
NCBI ID   WP_371903413.1    Uniprot ID   -
Organism   Legionella pneumophila strain ST42 isolate ST42     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2455384..2466088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BT137_RS11090 (EUL120_02214) - 2456616..2457494 (+) 879 WP_038839266.1 lpg2327 family Dot/Icm T4SS effector -
  BT137_RS11095 (EUL120_02215) lem22 2457758..2458141 (+) 384 WP_038839268.1 Dot/Icm T4SS effector Lem22 -
  BT137_RS11100 (EUL120_02216) - 2458335..2458565 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  BT137_RS11105 (EUL120_02217) - 2458546..2459442 (+) 897 WP_162266924.1 polyprenyl synthetase family protein -
  BT137_RS11110 (EUL120_02218) bioC 2459486..2460340 (-) 855 WP_038839276.1 malonyl-ACP O-methyltransferase BioC -
  BT137_RS11115 (EUL120_02219) comFC 2460384..2461088 (+) 705 WP_371903413.1 ComF family protein Machinery gene
  BT137_RS11120 (EUL120_02220) - 2461117..2462190 (-) 1074 WP_040148027.1 M50 family metallopeptidase -
  BT137_RS11125 (EUL120_02221) - 2462247..2462525 (-) 279 WP_010948040.1 hypothetical protein -
  BT137_RS15865 (EUL120_02222) - 2462543..2462719 (+) 177 WP_014844483.1 hypothetical protein -
  BT137_RS11130 (EUL120_02223) hemA 2462843..2464117 (+) 1275 WP_027225189.1 glutamyl-tRNA reductase -
  BT137_RS11135 (EUL120_02224) prfA 2464101..2465189 (+) 1089 WP_010948042.1 peptide chain release factor 1 -
  BT137_RS11140 (EUL120_02225) prmC 2465182..2466045 (+) 864 WP_027265185.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26732.35 Da        Isoelectric Point: 9.2792

>NTDB_id=1145630 BT137_RS11115 WP_371903413.1 2460384..2461088(+) (comFC) [Legionella pneumophila strain ST42 isolate ST42]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCMEFMKQIGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDRAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTGLLARQLNIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVPPVTYEHVMIVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1145630 BT137_RS11115 WP_371903413.1 2460384..2461088(+) (comFC) [Legionella pneumophila strain ST42 isolate ST42]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATGGAGTTTATGAAACAAATTGGATCATGCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGCGTTAGAAAAAGGCCCTCCTTTGATAGAGCTTATATAGCGTATCGTTTT
GAAGAGCCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACT
TCTTAATGCCTTACCCAAAAGCGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GGGGATTTAACCAGGCTGCTGTATTAACCGGATTATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGTCAA
AAAATAATCAATACCGCTTCACAAGCCAACCTTGATGGAGAGCAACGAAGAAAAAATTTACGTCATGCTTTTTATGTACC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACAT
TAAAAAATGCCGGAGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGGCTGTAACTAAGAACTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

98.291

100

0.983
  comFC Legionella pneumophila strain ERS1305867

97.959

83.761

0.821

Multiple sequence alignment