Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilE   Type   Machinery gene
Locus tag   BT137_RS02730 Genome accession   NZ_LT632617
Coordinates   544574..545023 (-) Length   149 a.a.
NCBI ID   WP_010946364.1    Uniprot ID   Q5ZXV4
Organism   Legionella pneumophila strain ST42 isolate ST42     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 539574..550023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BT137_RS02710 (EUL120_00536) - 539848..540240 (-) 393 WP_011214843.1 hypothetical protein -
  BT137_RS02715 (EUL120_00537) - 540377..540754 (+) 378 WP_038837636.1 hypothetical protein -
  BT137_RS02720 (EUL120_00538) - 540956..542263 (+) 1308 WP_038837639.1 tetratricopeptide repeat protein -
  BT137_RS02725 (EUL120_00539) comEC 542289..544496 (-) 2208 WP_038837641.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BT137_RS02730 (EUL120_00540) pilE 544574..545023 (-) 450 WP_010946364.1 type IV pilin protein Machinery gene
  BT137_RS02735 (EUL120_00541) - 545035..548544 (-) 3510 WP_050566909.1 pilus assembly protein -
  BT137_RS02740 (EUL120_00542) - 548557..549069 (-) 513 WP_038837643.1 pilus assembly protein -

Sequence


Protein


Download         Length: 149 a.a.        Molecular weight: 16296.57 Da        Isoelectric Point: 7.6922

>NTDB_id=1145602 BT137_RS02730 WP_010946364.1 544574..545023(-) (pilE) [Legionella pneumophila strain ST42 isolate ST42]
MLSHVHFMKNSRMKQSAFTLVEVLISMVIMGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTPNGYYTINISNLTATTYTLTATPVGTQAKDTECASMSINQANVKTAVDSSANAQPECWNPG

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1145602 BT137_RS02730 WP_010946364.1 544574..545023(-) (pilE) [Legionella pneumophila strain ST42 isolate ST42]
ATGCTCAGTCATGTACATTTTATGAAGAATAGCCGTATGAAACAATCGGCATTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTATGGGAATTCTGGTTTCAATTGCCTATCCATCCTATTTACAATATATCCAAAAATCCCGTCGTGCCGATGCTC
ATGCCACATTGACACAAGATCAAATTATTTTAGAACGCTGCTACTCACAGAATTTTTCTTATGCTGCGGCGTGTGGCGCC
TTACCAGCATTTCCGCAAACAACTCCGAACGGATACTATACTATCAATATTTCAAACCTGACAGCCACAACGTATACCTT
AACTGCAACCCCTGTTGGAACTCAAGCCAAAGATACCGAGTGCGCCAGCATGTCAATTAACCAGGCCAATGTAAAAACAG
CAGTAGATTCCTCTGCCAATGCGCAACCAGAATGCTGGAATCCCGGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5ZXV4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

100

100

1

  pilE Legionella pneumophila strain ERS1305867

100

100

1


Multiple sequence alignment