Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   BQ6063_RS13845 Genome accession   NZ_LT632615
Coordinates   3025723..3026808 (+) Length   361 a.a.
NCBI ID   WP_061690773.1    Uniprot ID   -
Organism   Legionella pneumophila strain ST23 isolate ST23     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3020723..3031808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ6063_RS13820 (EUL28_02746) - 3021116..3021865 (-) 750 WP_014842652.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  BQ6063_RS13825 (EUL28_02747) rsmB 3021862..3023145 (-) 1284 WP_042754694.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  BQ6063_RS13830 (EUL28_02748) fmt 3023142..3024086 (-) 945 WP_027226721.1 methionyl-tRNA formyltransferase -
  BQ6063_RS13835 (EUL28_02749) def 3024083..3024595 (-) 513 WP_010948295.1 peptide deformylase -
  BQ6063_RS13840 (EUL28_02750) - 3024689..3025726 (+) 1038 WP_014842655.1 LysM peptidoglycan-binding domain-containing protein -
  BQ6063_RS13845 (EUL28_02751) dprA 3025723..3026808 (+) 1086 WP_061690773.1 DNA-processing protein DprA Machinery gene
  BQ6063_RS13850 (EUL28_02752) - 3026798..3027235 (+) 438 WP_015961701.1 DUF494 family protein -
  BQ6063_RS13855 (EUL28_02753) topA 3027315..3029594 (+) 2280 WP_061690774.1 type I DNA topoisomerase -
  BQ6063_RS13860 (EUL28_02754) - 3029805..3031778 (-) 1974 WP_061690775.1 acyltransferase family protein -

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 39587.73 Da        Isoelectric Point: 7.2592

>NTDB_id=1145551 BQ6063_RS13845 WP_061690773.1 3025723..3026808(+) (dprA) [Legionella pneumophila strain ST23 isolate ST23]
MNNLQPLLALNRMKRIGPRTVLKLQRRWPDLNLMFQLSSVDLEEAGLPSWLAQTIKNFDPDFIKTDLNWLSSSENHHILT
WDSPYYPALLKEIADPPFILYAKGELSALTQPSLAIVGSRNASVTGNENARAFSREISRHGVSIVSGLALGIDAHAHLGC
LEGGGKTIAVLGTGIDCIYPRRHLKLAEQITENGLLLSEFPLKSPPIAGHFPLRNRIISGLSLCILVIEAAIKSGSLITA
RMALEQNRDVLAIPGSIHNPLARGCHYLLQQGAKLVTSVADVLDELKIEHHQFTSNKPIFSLASGKENLVKFIGFETTTI
DQIIDRSGYGMEQVTSGLAELELKGAVMAVPGGYIRCEYER

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=1145551 BQ6063_RS13845 WP_061690773.1 3025723..3026808(+) (dprA) [Legionella pneumophila strain ST23 isolate ST23]
ATGAATAATCTGCAACCCCTCCTCGCCCTAAACAGGATGAAAAGAATTGGCCCCCGAACCGTATTAAAACTGCAAAGAAG
ATGGCCTGATTTAAACCTTATGTTCCAACTGTCCAGTGTTGATCTGGAAGAAGCGGGCTTGCCATCCTGGTTGGCACAAA
CCATAAAAAATTTTGATCCGGACTTTATAAAAACTGATTTGAACTGGCTAAGTTCATCAGAAAATCATCATATTTTAACT
TGGGACTCCCCCTATTATCCCGCATTGCTCAAAGAAATAGCCGATCCTCCCTTCATTTTATACGCTAAAGGTGAGCTGTC
CGCCTTGACACAACCCAGCCTGGCTATTGTTGGAAGTCGCAATGCTTCTGTAACAGGAAACGAGAATGCCCGAGCGTTCT
CCAGGGAGATTTCCAGGCATGGGGTAAGCATAGTGAGTGGTTTAGCCTTGGGAATTGATGCTCATGCTCATTTAGGCTGT
CTGGAAGGTGGCGGCAAAACGATAGCCGTCTTAGGTACCGGAATTGATTGTATCTATCCGCGCCGGCATTTAAAATTAGC
TGAGCAAATTACAGAGAATGGTTTATTATTAAGCGAATTTCCTTTAAAAAGTCCACCAATTGCTGGACATTTTCCACTCA
GAAATCGTATAATAAGCGGTCTATCATTATGCATTTTGGTTATCGAGGCAGCAATTAAAAGCGGTTCTTTAATTACAGCA
AGAATGGCTCTGGAACAAAACAGAGATGTATTGGCCATTCCCGGATCGATTCATAACCCGTTAGCCAGGGGCTGCCACTA
CTTATTGCAGCAGGGTGCGAAATTAGTAACTTCAGTGGCTGATGTTCTTGATGAGCTAAAAATTGAGCACCATCAGTTCA
CTTCTAATAAACCAATTTTTTCCCTTGCCAGCGGTAAGGAAAACCTAGTAAAGTTCATTGGTTTTGAAACTACAACTATC
GATCAAATCATTGATCGTAGTGGATATGGCATGGAACAAGTCACGAGTGGACTGGCTGAACTAGAATTGAAAGGGGCTGT
GATGGCAGTGCCCGGTGGCTATATAAGGTGTGAATATGAAAGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

99.446

100

0.994

  dprA Vibrio cholerae strain A1552

43.048

100

0.446

  dprA Vibrio campbellii strain DS40M4

46.505

91.136

0.424

  dprA Glaesserella parasuis strain SC1401

39.418

100

0.413


Multiple sequence alignment